YIPF1 (Yip1 domain family member 1)

Gene: YIPF1 (Yip1 domain family member 1) Sus scrofa

Analyze

Symbol:

YIPF1

Name:

Yip1 domain family member 1

RGD ID:

14053256

Description:

ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN vesicle-mediated transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endosome membrane (inferred); Golgi apparatus (inferred); Golgi medial cisterna (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein YIPF1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	158,403,072 - 158,445,511 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	158,400,008 - 158,445,516 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	146,104,824 - 146,147,122 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

vesicle-mediated transport (IEA)

Cellular Component

endosome membrane (IEA)

Golgi apparatus (IBA,IEA)

Golgi medial cisterna (IEA)

Golgi membrane (IEA)

Golgi trans cisterna (IEA)

membrane (IEA)

nucleoplasm (IEA)

plasma membrane (IEA)

trans-Golgi network (IEA)

transport vesicle (IEA)

Molecular Function

protein binding (ISO)

small GTPase binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

YIPF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	158,403,072 - 158,445,511 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	158,400,008 - 158,445,516 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	146,104,824 - 146,147,122 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YIPF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	53,851,733 - 53,889,797 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	53,851,719 - 53,889,798 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	54,317,406 - 54,355,470 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	54,089,994 - 54,128,041 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	52,605,075 - 52,643,123 (-)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	52,433,081 - 52,471,200 (-)	NCBI		HuRef
CHM1_1	1	54,433,766 - 54,471,857 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	53,734,613 - 53,772,679 (-)	NCBI		T2T-CHM13v2.0

Yipf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	107,149,068 - 107,217,020 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	107,171,560 - 107,217,020 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	107,314,223 - 107,359,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	107,314,363 - 107,359,823 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	106,987,036 - 107,032,427 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	106,812,363 - 106,857,754 (+)	NCBI		MGSCv36	mm8
Celera	4	105,669,142 - 105,718,384 (+)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	50.18	NCBI

Yipf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	127,340,962 - 127,376,270 (+)	NCBI		GRCr8
mRatBN7.2	5	122,112,144 - 122,147,729 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	122,112,212 - 122,147,466 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	124,731,520 - 124,766,765 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	126,454,549 - 126,489,800 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	126,505,867 - 126,541,115 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	126,932,730 - 126,968,110 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	126,932,760 - 126,968,190 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	130,781,744 - 130,817,034 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	128,425,973 - 128,461,233 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	128,431,198 - 128,466,459 (+)	NCBI
Celera	5	120,857,831 - 120,893,179 (+)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

Yipf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	5,370,819 - 5,408,470 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	5,369,690 - 5,408,470 (+)	NCBI	ChiLan1.0	ChiLan1.0

YIPF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	172,947,041 - 172,984,902 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	172,087,839 - 172,125,713 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	53,125,832 - 53,163,694 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	54,720,334 - 54,758,382 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	54,720,334 - 54,758,382 (-)	Ensembl	panpan1.1		panPan2

YIPF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	55,118,572 - 55,154,653 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	55,118,458 - 55,154,236 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	55,184,475 - 55,221,311 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	55,306,133 - 55,342,996 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	55,230,295 - 55,343,004 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	55,301,244 - 55,337,093 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	55,190,500 - 55,227,319 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	55,580,041 - 55,616,719 (+)	NCBI		UU_Cfam_GSD_1.0

Yipf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	68,113,148 - 68,153,333 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	7,262,707 - 7,300,295 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	7,263,004 - 7,303,090 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YIPF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	79,045,806 - 79,086,694 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	79,046,145 - 79,087,177 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	38,191,200 - 38,237,251 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Yipf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624934	612,830 - 667,223 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624934	612,821 - 665,174 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in YIPF1
1726 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	9	2	3	5		22	2	3	3
Low	1	2			2	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003356459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005665413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002345188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK232590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK396144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP340391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01095504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000026980 ⟹ ENSSSCP00000019543

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	158,403,265 - 158,445,505 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000045975 ⟹ ENSSSCP00000031350

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	158,403,266 - 158,445,506 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000057878 ⟹ ENSSSCP00000050699

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	158,403,268 - 158,445,503 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000061316 ⟹ ENSSSCP00000046965

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	158,403,072 - 158,445,511 (+)	Ensembl

RefSeq Acc Id:

XM_003356459 ⟹ XP_003356507

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	158,403,079 - 158,445,516 (+)	NCBI

Sequence:

show sequence

GCTTTACCTGGGTCTCTTTAAGAGCCCGAGCCTCGCGGTTCGGAGGGGTGGCGGAGGGAGCGAG
CTCTGGATGCTGCTGCCCGCTGAGGTCTCCGGAAGCAGCGTCCCCCGGAGCTGCTGTCTCTTTA
AGGAGGCGGGGCTCTGCCCGGAGGAGGCAGAGAAGTTCTGCCCCCCGGATCTCCGGTTTCCGGC
CACTCGGCGGGACCAGGACCTGAGCGTGAATCTGAGGCCGGAGGCTTCCCGGGACCCGCTGGGC
GTCGAGCCCCCCTCCCCGAGACATCCACAAATTTTCTTCCCACTAATTGGGAGAAGACCCATTG
GCTGAATGGCAGCTGTAGATGACTTGCAGTTTGAAGAATTTGCTGATTCAGCCACTTCTCTAGC
AGCAAACCCAGATGCCACCACGATCAGCATTGAGGATACTGGTGAAACCCCCAAACATCAGTCA
GGACCCTCAAGAGGCTCAGGGAGAGAAGAGGATGATGAACTACTAGGAAATGATGACTCGGACA
AAACTGAGTTACTTGCTGGACAGAAGAAAAGCTCCCCCTTCTGGACATTTGAGTACTATCAAAC
ATTCTTTGATGTAGACACTTACCAGGTCTTTGACAGAATAAAAGGGTCTCTTCTACCAATACCA
GGAAAAAACTTTGTGAGGTTATATATCCGCAGCAATCCAGATCTCTATGGCCCCTTTTGGATAT
GTGCCACACTGGTCTTTGCCATAGCAATTAGTGGGAATCTTTCCAACTTCTTAATCCATCTGGG
AGAGAAAACGTACCATTATGTGCCTGAATTCCGAAAAGTGTCCATTGCGGCCACAATCATCTAC
GCCTACGCCTGGCTGGTCCCCCTCGCTCTCTGGGGTTTCCTCGTGTGGAGAAACAGCAAAGTGA
TGAACATCGTTTCCTACTCGTTTTTGGAGATCGTGTGCGTCTACGGGTACTCGCTCTTCATTTA
CATTCCCACGGCGATACTGTGGATCATCCCCCAGAAAGCTGTCCGCTGGATTCTCGTCACGATT
GCCCTGGGCATCTCGGGCTCTGTCTTGGCAATGACATTTTGGCCAGCTGTTCGTGAGGACAACC
GACGCATCGCGTTGGCCACTATTGTGACAATTGTGCTGCTTCACATGCTACTCTCTGTGGGCTG
CTTGGCCTACTTTTTTGATGCACCAGAGATGGACCATCTCCCACCAGCCACCGCAGCTCCAAAC
CAAACAGTTGCAGCAGTCAAGTCCAGCTAAAGAGGAAAGGGAGCGATTGTATTTGCATCTCCTC
GCGGTGAGTTCTCTTTGACGGTTTGCGGAGTGTGGTTCTTTTGGACATGGCATCCACTGCAGGA
AAGCAGAGTGACCAAAGGCAGCAGGAACACTGATGGCGTGGCCCCAACCCCCGATATCAGGATA
GTGCTGCCCTGAAGCCTGAATCACCTATTTAATAAACAAATTAAATGTGGTTGAGCATA

hide sequence

RefSeq Acc Id:

XM_005665413 ⟹ XP_005665470

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	158,403,076 - 158,445,516 (+)	NCBI

Sequence:

show sequence

TTGGCTTTACCTGGGTCTCTTTAAGAGCCCGAGCCTCGCGGTTCGGAGGGGTGGCGGAGGGAGC
GAGCTCTGGATGCTGCTGCCCGCTGAGGTCTCCGGAAGCAGCGTCCCCCGGAGCTGCTGTCTCT
TTAAGGAGGCGGGGCTCTGCCCGGAGGAGGCAGAGAAGTTCTGCCCCCCGGATCTCCGGTTTCC
GGCCACTCGGCGGGACCAGGACCTGAGCGTGAATCTGAGGCCGGAGGCTTCCCGGGACCCGCTG
GGCGTCGAGCCCCCCTCCCCGAGATGAGGAAACTGAGGCATCCCCGCCCCCCGCCAGAAGCCCG
CAGTTGAACAGCGAGAAGCAGCAGAATTGAGAATGAAACCCAGACATCCACAAATTTTCTTCCC
ACTAATTGGGAGAAGACCCATTGGCTGAATGGCAGCTGTAGATGACTTGCAGTTTGAAGAATTT
GCTGATTCAGCCACTTCTCTAGCAGCAAACCCAGATGCCACCACGATCAGCATTGAGGATACTG
GTGAAACCCCCAAACATCAGTCAGGACCCTCAAGAGGCTCAGGGAGAGAAGAGGATGATGAACT
ACTAGGAAATGATGACTCGGACAAAACTGAGTTACTTGCTGGACAGAAGAAAAGCTCCCCCTTC
TGGACATTTGAGTACTATCAAACATTCTTTGATGTAGACACTTACCAGGTCTTTGACAGAATAA
AAGGGTCTCTTCTACCAATACCAGGAAAAAACTTTGTGAGGTTATATATCCGCAGCAATCCAGA
TCTCTATGGCCCCTTTTGGATATGTGCCACACTGGTCTTTGCCATAGCAATTAGTGGGAATCTT
TCCAACTTCTTAATCCATCTGGGAGAGAAAACGTACCATTATGTGCCTGAATTCCGAAAAGTGT
CCATTGCGGCCACAATCATCTACGCCTACGCCTGGCTGGTCCCCCTCGCTCTCTGGGGTTTCCT
CGTGTGGAGAAACAGCAAAGTGATGAACATCGTTTCCTACTCGTTTTTGGAGATCGTGTGCGTC
TACGGGTACTCGCTCTTCATTTACATTCCCACGGCGATACTGTGGATCATCCCCCAGAAAGCTG
TCCGCTGGATTCTCGTCACGATTGCCCTGGGCATCTCGGGCTCTGTCTTGGCAATGACATTTTG
GCCAGCTGTTCGTGAGGACAACCGACGCATCGCGTTGGCCACTATTGTGACAATTGTGCTGCTT
CACATGCTACTCTCTGTGGGCTGCTTGGCCTACTTTTTTGATGCACCAGAGATGGACCATCTCC
CACCAGCCACCGCAGCTCCAAACCAAACAGTTGCAGCAGTCAAGTCCAGCTAAAGAGGAAAGGG
AGCGATTGTATTTGCATCTCCTCGCGGTGAGTTCTCTTTGACGGTTTGCGGAGTGTGGTTCTTT
TGGACATGGCATCCACTGCAGGAAAGCAGAGTGACCAAAGGCAGCAGGAACACTGATGGCGTGG
CCCCAACCCCCGATATCAGGATAGTGCTGCCCTGAAGCCTGAATCACCTATTTAATAAACAAAT
TAAATGTGGTTGAGCATA

hide sequence

RefSeq Acc Id:

XR_002345188

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	158,400,008 - 158,445,516 (+)	NCBI

Sequence:

show sequence

CAAGGCCAAGGATGGAACCTGTGTCCTCATGGATATGAATCGGCTTCTCAACCTACTGAGCCAC
AGTGGGAACTCCTCTTTGGGCTCTTTCTTTGCCTTCCATGTCAGGGGGCTAGTCTGCAAATCAA
TAGGATTTATTCTTGCCTTATTCTTGATCTTAGCAGGAGAGCTTCTGGTGTCTCACCATTAAGT
ATATTAGTTGTAGGTCTTTTGTAGATGTTCTTTACCAAGTTGAGGAAGTTCTCCTTTATTCCTA
GATTGCTAAGAATTTTTGTAATTAATGGGTATTGGATTTTTGTCAAATGATTTTTCTGCATGTA
TTGATATGATCATGTGGGTTTTTTTTTTTTATTCTTTAGGCTTTTGATGTAATGGATTACATTA
ATCAAATTTTCTTTTTTTTTTGGCTGCACCCATGGCTTGTGGCAGTTCCCTGGCCCGGGATCAA
ACCCACACTGCAGTTGTGACCTACACCACAACTGCAGCAACACTGTGAACGTTTGAGCTCTGAG
TTTCTCAACTTTGACATTTTGGACTAGGTAATACTTCTTTGTGGGGACTATCCTGTACATTGTA
GGATGTTTAGCAGCACCCTGTCCAGTAGCATGCCACAAGTCATGACAATCAAAATGTCTTTAAA
AAGGGGGGGAGTTCCTTGGTGGACTAAGGGATAGGACTCAGTGCTTTCACTGTTGCAGGCAAGG
TTCGATTCCTGGTCTGGGAACTGTGATTCCCGTATTAAGCGGACGCATGCCCTGGCCTTCCCTC
CCCCACAAAAAAAAAAAAGTCTTCAGATATTTCCAAATATCCCCTGGGAGCAAAACAGTCCCTG
TTGAGAATCAATGTTTTAGTTAAACCAGTGTACAGTATAGTTATCTTTGATTCTTGTCTCATTT
TGAGCCAAAAGTTATGTATATCATTATAATTAATATATCAGTATAACTTTTACTTGTTTCCAAG
AGAAGAAACATCACCTCTTTCCCCCCCACACACACTTCTCACTAGCAATGGGATTGATGTTGTC
ATATGACTAGTAGGCAGTCAGGTTCCAAAATTCCATCCTGAGGACTGCTTTCTGGGGCCACACT
TGGTACCAACATGCCTTAGTGTGGGCCCTTTATCTCCTATGAACACTTTATTGGCAAGTGTGAG
AGCAAGGATCAGGAGTGAAGGGCAGGAATTGTAAAGCAGGGAAGGAAGGAGAGCCATTGCAAGG
ATGCATGATCAAATTAGCCACTTCCGAAGGCCTTCAATTTTTTGATCCCGCAAGACAGTCTGAA
AGCTGAATGAGATAGAGGGGAAAAAGAGAGAAGCATGTATTCATCAGCTGTTGACTTCATTGGT
CAAGGAGGTGTCCCATGAGGCATTAACCACTTCCCACTCCTGCACTTCTGGGTTGCACCTGTCC
TGGGGCCGAACCATTCCTCCAGTCCTGGGACCCCTAAATCAAGACACAAGCCCTGATGCAGAAA
GAAAATGAGACGCCTGAGGGTTGGACTTGAGGTGAGCTCACTTGAGCTATACCTGCTGAAGCCA
GAGTAAGATTGGTGGGGGTGAAATAAGCAGCAGTGAAGCCAAGATGATCTGGCAGGGGGCATAA
GAAGTCTTTGATACACTTACGTGCCTGAATTCCTGGTACATATTCAACCAAAGTACCCTGGTAC
ATATTCATTCCTGGTACATATTCAACCAGAACACCCTGCACATACACTAACCTCAGCCTTTTAA
TCTGTAAAAGGAGGATCACCACCTCAAGCTTGCTGGATTTTTCTGTGAATTAGAGATTCTGCCT
GTATAAAGCCTGATTATGGTGTCAATGCAATAAAGACACTCTGCGTGTATATGTGTATAACCAA
GAGTCAGATGTCATTCCAGCCGAACATAAGGGCCCAGTGTGATGAGGCCAAAGTCACAGTTTCC
ACCTTTTGTGGGGAGCGAATTTGGCTTATGCTGCTTAGACAGCCAGAACTTGATCACTTTACAG
TTAGCCTTCAGTGAGCTACTATTCTGTGCCCAACCCTGGAACAGCCCTGGGGACCGGGAGACCA
GGTTCATTCCCGATCCTTATCCTCAAAGCACTCACAGGCTGGCAGAGATGGGCAAACAATAACC
ACTACCTTGGTAGAAGCAAGCACAGGGGACAATGGGCGCAAAAGAAGTCCTGGGAGTTGAAGTC
AGGCTTTCCCTAGGAGGAAGAAGTGGTACTGAAATCTGGAAGGATGTGTAGGTGTTAAGCCAAG
ATTGAAAGCTGAGCAAAAATGTTTCTCATCTACTCAGTGCAACTCAGTCGTTTACTGGGGCCCT
GCCATAGTCAAGGTGGTGTCAGATGCCATAAGGGGACACAGGGGTGAGTGAGGCCAGTCCCTAC
TGTGCCCCCAGCCCTCGACCGGGGCATAATTTATACCTGCTGAAGCCAGGCTAAGATTAGTGGT
GGTGAAATAAGCGGCAGGTAAAGCCAAGAGGCTCTGTCTCGTAGGAGTGAAGGAAAAATTACAT
TTAGCCGGGTATCTCTATTAACAGACAACATCCTGCCCTGGCTCACTCATTCTCAAACTCAGAA
AGTAATGGCTCTTATTCACTGGTTAAATTTTATGGCCAAAAAAACAATGGGGGGATTGAAGACT
TTTTTTTTATTTTTCGCCATCGTCTTTCCTTATGCGTTTTTGTTTCTTGTTTTTTGTTTTAGGC
CGCGCCCACGGCATATGGAAGTTGCAGGCCAGGGGTGGAATGGGAGCCACAGCTGCGGGCCTAG
GCCACAGCTCCCGGAAACGTCTGATCCTTAGCCCAGCGATGGAACCCTCCAACTCATGGTTCCT
AGTCAGATTCGTTTCTGCTGCACCACAACGGGGAACTCCTTAAGCTATTTTAAATTTCACTAAA
AAAGAGGATAAAACAAACATAAAGTAAACCCCACTCTCCAGAGATTTCTCTGCTCCGCCCCCGG
AGCGAGTCGAACTGTGGCAGACCCCGTAAATGTCTGTGAATGAGTGATCCAGGGCAGGAGGTTG
TCTGTTAATAGAGATACCCCGCTAAATGTAATTTTTCCTTCACTCTCGCGTGACAGCCCCTTGG
CTTTACCTGGGTCTCTTTAAGAGCCCGAGCCTCGCGGTTCGGAGGGGTGGCGGAGGGAGCGAGC
TCTGGATGCTGCTGCCCGCTGAGGTCTCCGGAAGCAGCGTCCCCCGGAGCTGCTGTCTCTTTAA
GGAGGCGGGGCTCTGCCCGGAGGAGGCAGAGAAGTTCTGCCCCCCGGATCTCCGGTTTCCGGCC
ACTCGGCGGGACCAGGACCTGAGCGTGAATCTGAGGCCGGAGGCTTCCCGGGACCCGCTGGGCG
TCGAGCCCCCCTCCCCGAGATGAGGAAACTGAGGCATCCCCGCCCCCCGCCAGAAGCCCGCAGT
TGAACAGCGAGAAGCAGCAGAATTGAGAATGAAACCCAGACATCCACAAATTTTCTTCCCACTA
ATTGGGAGAAGACCCATTGGCTGAATGGCAGCTGTAGATGACTTGCAGTTTGAAGAATTTGCTG
ATTCAGCCACTTCTCTAGCAGCAAACCCAGATGCCACCACGATCAGCATTGAGGATACTGGTGA
AACCCCCAAACATCAGTCAGGACCCTCAAGAGGCTCAGGGAGAGAAGAGGATGATGAACTACTA
GGAAATGATGACTCGGACAAAACTGAGTTACTTGCTGGACAGAAGAAAAGCTCCCCCTTCTGGA
CATTTGAGTACTATCAAACATTCTTTGATGTAGACACTTACCAGGTCTTTGACAGAATAAAAGG
GTCTCTTCTACCAATACCAGGAAAAAACTTTGTGAGGTTATATATCCGCAGCAATCCAGATCTC
TATGGTATGTGTAGTGCCATTCTGATTCTTTTCCCTGTACCAGCTCAACTCAGGTGAGTGTGTG
GTTTGCCTGGAAAGCTGGTGAAGTGCACTGCTGGCGGGGCGTGTGGCATTTTGTTGGACCCTTC
TGAGCTTCAGTAGCAGTCCTGCTACTGAATTTGGGGAGCAGATGCAATTATATGTTATATTAAT
GCCCTGATGACAAGTAACATAATGTCCTTTGGAAGTCTTCACATGACATTACAAACTGGAGACA
AATGAAGTCACTTTGTATAAGAAGAGATTATTTTATTTTATTTTATTATTTATTTTTCATTTTT
TGACCATGCCTATGGCATGGAGAAGTTCCCGGGCCAGGGATTGAACCCGGGCCACAGCTGTAGC
CCAAGCCACAGCAATGACGCCAGGTCCTTAATCCACCACACCACCAGGGAAGTCCAGATATTTT
TTAAAGACACTTTTTTTTTTTTGGGCCAGACACATGGCATGCAGACGTTTCCAGGCCAGGGATC
AAACCTGCACCATAACAGTGAACCTGAGCCAGAGCAGTGACAACACCAGATCCTTAACCTCCTG
CTCCACCAAGGAACCCCTATTAATTTTAATTTTAGAGGGTTTGGTGGTGGGGGTGAGTGTGGAG
AAGGTACTTTCACCCTTACTCATTGGTGTGCTAAGCTCAGGCTCTGTCTCAGACAGGCTGGCTT
CCCCGAGAACGGCTGGAGGAGGACGGGCCAGGGGATAACTGTCTATCCAACCTCCCTGCTCTTG
GAGAAAGGGTCAGAGGTCTACCGGGTGCTCTGGAGGGAAGGGGCTGCAACCATGGTGGCCTGTG
TGTTTGAGGGAGAGAGACGAGGTGGCTCTGAGTGCTTCTGGGTGCAGGAGTTTTGCAGAAGACT
TGGTGTACACGGGCCCATTTAATTCCTGCAACAAGCTTTGGCGTAGCTGTTTATTATTCCCATT
TTTCAAATGAGGAAGCTAATACTCACTGGGGTTCAGTAATATATGGACTCAATCCTGAACATAA
AGTATTGGAGTAATTGTACTTGTTGTTTATAGGAGGAAAGGGAATTCAAGAGGATTTTTGGGCG
CCACTCGTGACATAAGCTCTTTAACCCTTTCAGCAAGGCTAGATATCAAGTGCTGTTATTATCC
TTGTCTGCCATGCGAGGAGACTGATGCTGGGAGTTGTCACTAAAAAGCTAGAACACCCAGTTGC
AATAATGTGGATGAACCTGGAGGGTGTTTTGCTTGGTGAAATATGTCAGACAGAGAAAGACAAA
TGCTGTGCGATATTACTTATATGTGGAATCTAAAAACCAAAACAAACTAGTGAGTGTAACAGAA
AAGAAATAGACTCACAAATAGAACAAACTAGTGGCTACCAGTGGGGAGAGGAAAGGGAGGGTGG
AGCCCAAATAGGGACAAGGGATTAAGAGGTACAAACTACCTAAAATAAAGTTTTATACAAATAC
AACTTTTTTATATAAAAAACTTTTTTTTTTTTTAAGGGCCACATCCATGGCATATGGAAATTCC
CAGGCGAGGAGTCAAATCGGAGTTATAGCTGCCGGTCTACACCACAGCCACGGCAACATGGGAT
CCGAGCCCACCTACCACACCTATGATCTACTCACAGCTCATGGCAACGCCAGATCCTTAACCCA
CTGAGCGAGACCAGGGATCAAACCCGCATCCTCATGGATCCCAGTCGGGTTTGTTAACCGATAA
ACCACGAAGGGAACTCCTAGAAAACTTTTTTTTATATAAACACTTTTTTTATATAAATAAAGCT
AGAAGTTCCCATTGTGGTGCATTGGAAACGATTCCGACTAGTATCCATGAGAACATGGGTTTAA
TCCCTGGCCTCGATCGGTGGGTTGGGGATCCGGCATTGCTGTGGGCTGTGGTGTAGGCCGCAGA
CACAGCTCAGATCCTGTGTTGCTGTGGCTCTGGCATAGCCTGGCAGCTGCAGCTCCAATTCATC
CCCTAGCCTGGGAACTTCCAACTCTCGCTGGTGTGGCCCTAAAAAAGCAAAAAATAAAAAGTAA
ATTAAAATAAATTAAATCTGCTATAAGGATATGATATGCAGCACAAGGAATATTGATAATATTT
ACAATAATATAAATGGAATATAATCTTTAAAAATTGTGAACACTGTGTTGCACACTGGAAACAT
ACAATATTGTAAGTCACCTATGCCTCAATTAAAATGTAAAAGTAGAACTAGCACCCAGTTTAGT
GTTCTATAAAGGCCCTATTTATTCTATTAGCCTGGTGTTTTTAAGCTGCAGAACCTTTTCATCA
AATGTCCTGGATATCCAATGTCTAAACTAATAAAAGGGGAAATGCTCTGGTGGAGGTTGAGGAA
AGTCTTCCCTCCGCTTAGGTGCCTCTCTCAAGGACATTACCAGAAGTTCCATCCAGGTGTCGTT
TGGAATTCCTGGAGCTCCAGTGACATGATGTGAAAACCACTGCCTTGGCCCATGCCTCTCAACT
AAAGGCTGCCAAGGCTGGGTCTCTTTTTAGCTCTCTAATTCATTCTTACTTCGAGCTTGAGAAC
TTCTTGAGAAGTAGGCTTTGTGTTTGAGGAATCCTCAGTGCCTGGCAGAAGGCGTAGCACAGAA
TAGATGCTCAAACAAGTTTTGAGTCCTCCGTTGTGTGCTAGAGGCTGAGGATTCAAAGATAAAG
TCGTGATCTCTACCCCGAAGAAGAAAGGAGAGAGGGAACCAGTGTCTGCTGAGCACCTAACGGG
AGCCACACGTGGAGCTCAGCACTGTTTTGCTATGCTACACCGTTTTATTTCTCGCTCTCCAAGG
TAGCCTTATCTTACCAAAGAGAAAACCTAACGTTTGGGGAGGATAGTTTGCCCGTCGTGAGTTT
GCCCATAGAGTTCGCAATAACCATAGCAATAATAGCAAACACACAAGGTATGCTTGTTATGTGC
CAGACACTGTTCTTAGGGAACACTGCACTAGCTCTGGAATCCTCATAACAACCCCAGCTTTATG
AGATAGGTGCTGTTACTATCCCCTGAGGATCCCAAGTCCCACGAAGTCAAGCCACAAGCCTAAG
ATCACACAGCTGATGAGTGGTGGAGCTCGGTATTCCAATCAGCACCTCAGCTTCTGATCCATAC
TCTTCGTCGCTGTGTTAGGCTGTCTCTCATGACAAGGTCAGGGTTTGAACCCTGGGCTTTCTTC
TTTCCATGACACTATTAGCCTCATGAGCACATAAGCATAGGGCTAAAAGAAGGCCTAACATCAG
AGGAGTGTTTTCTAGCAGAGGGGCCTGGGCCTTGCAGGGCTGGTTGGGGAAAGGCGGTCGGGAA
TGAGATGACAGAAGAGCCAGACTGCAGAATCTGAGGGAGAGATTAATGAATTGGACGATGTTAA
AACACATTTTAAATTTCTACAGCACAAAATAAACCATAAGCAAAGTAAAAACAAAACACAAACC
GAAAAACCCCCATAGACCAGAGATAATATTTCAATGCGGATAACCCACAAAGGATGAAAAGCAA
GAATACAGGTAAGGTGCCTACTGATGTTAAGAATAAAACCAGGAGTTCCTGTTGTGGCTCAGCG
GTAATGAATCCTACTAGTATCCATGAGGACACAGGTTCGATCCTTGGCCTTACTCAGTGGGTTA
GGATCCGGCAAGGCTGTGAGCTGTGGTGTAGGTCGCAGATGTGGCTCAGATCCCGTGTTGCTGT
GACGGTGGCATAGGCTGACAGCTGCAGCCCCGATTTGACCCCTAACCTGGGAACCTCCATATGC
CACAGGTGTGGCCCTAAAAAGCAAAAAATAAAATAAAATAAAACCAATTATAAGTTCTAGGGAA
ACATGAGCAATTCACAGAAAAGGAAACCCAAATGGCCAATAAATACATGAAAATATGCTTAGCC
CCACCTGCAATCAGGGAAATAAAAACTAAAACGTCATAGTAAACCTAGACAAGTTGGCTTGTCT
TCATTCATTTAATTAATGCAACAAACATGGAGCACTTACTCTTTTAGGAAGTGGAGAGGCAACA
GTAAATAGACAAAAATCCCTGCCCCGAGGCAGTTTATAGTCTGAGTTTAACAATAGACAAAGAA
AATGGGTAGTATATATGGTGTGCTAGTGATAATGCTAAAGAGAAAATTTAAAAGCAGAGAAGAA
AGAGTCAATGTGTAGGTGGGTGGGTTTGAAATTTAAAAGGCGAATGTTGAGTGACTCCCTGAAG
GAGCAACGTGGGGAGCCCTCTCTTGGAAGAGCATTCCAAACAGCTCAGCACGTGCAGAGGCCCT
GAGGCAGGAACCTGCTCAAAGGACAGCGAAGAGACCAGTGTGACCGAGCCGGAGTGAACAAGGG
CATCTAGCAGGCCCCTTTTGGATATGTGCCACACTGGTCTTTGCCATAGCAATTAGTGGGAATC
TTTCCAACTTCTTAATCCATCTGGGAGAGAAAACGTACCATTATGTGCCTGAATTCCGAAAAGT
GTCCATTGCGGCCACAATCATCTACGCCTACGCCTGGCTGGTCCCCCTCGCTCTCTGGGGTTTC
CTCGTGTGGAGAAACAGCAAAGTGATGAACATCGTTTCCTACTCGTTTTTGGAGATCGTGTGCG
TCTACGGGTACTCGCTCTTCATTTACATTCCCACGGCGATACTGTGGATCATCCCCCAGAAAGC
TGTCCGCTGGATTCTCGTCACGATTGCCCTGGGCATCTCGGGCTCTGTCTTGGCAATGACATTT
TGGCCAGCTGTTCGTGAGGACAACCGACGCATCGCGTTGGCCACTATTGTGACAATTGTGCTGC
TTCACATGCTACTCTCTGTGGGCTGCTTGGCCTACTTTTTTGATGCACCAGAGATGGACCATCT
CCCACCAGCCACCGCAGCTCCAAACCAAACAGTTGCAGCAGTCAAGTCCAGCTAAAGAGGAAAG
GGAGCGATTGTATTTGCATCTCCTCGCGGTGAGTTCTCTTTGACGGTTTGCGGAGTGTGGTTCT
TTTGGACATGGCATCCACTGCAGGAAAGCAGAGTGACCAAAGGCAGCAGGAACACTGATGGCGT
GGCCCCAACCCCCGATATCAGGATAGTGCTGCCCTGAAGCCTGAATCACCTATTTAATAAACAA
ATTAAATGTGGTTGAGCATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003356507	(Get FASTA)	NCBI Sequence Viewer
	XP_005665470	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000031350
	ENSSSCP00000031350.1
	ENSSSCP00000046965
	ENSSSCP00000046965.2
	ENSSSCP00000050699.1
	ENSSSCP00030043605.1
	ENSSSCP00030043627.1
	ENSSSCP00050014656.1
	ENSSSCP00050014666.1

RefSeq Acc Id:

XP_005665470 ⟸ XM_005665413

- UniProtKB:

A0A287ASC2 (UniProtKB/TrEMBL), A0A8D0XZ94 (UniProtKB/TrEMBL), A0A286ZIK6 (UniProtKB/TrEMBL), A0A8D0Y2Y3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAVDDLQFEEFADSATSLAANPDATTISIEDTGETPKHQSGPSRGSGREEDDELLGNDDSDKT
ELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICA
TLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLVWRNSKVMN
IVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVTIALGISGSVLAMTFWPAVREDNRR
IALATIVTIVLLHMLLSVGCLAYFFDAPEMDHLPPATAAPNQTVAAVKSS

hide sequence

RefSeq Acc Id:

XP_003356507 ⟸ XM_003356459

- UniProtKB:

A0A287ASC2 (UniProtKB/TrEMBL), A0A8D0XZ94 (UniProtKB/TrEMBL), A0A286ZIK6 (UniProtKB/TrEMBL), A0A8D0Y2Y3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAVDDLQFEEFADSATSLAANPDATTISIEDTGETPKHQSGPSRGSGREEDDELLGNDDSDKT
ELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICA
TLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLVWRNSKVMN
IVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVTIALGISGSVLAMTFWPAVREDNRR
IALATIVTIVLLHMLLSVGCLAYFFDAPEMDHLPPATAAPNQTVAAVKSS

hide sequence

RefSeq Acc Id:

ENSSSCP00000019543 ⟸ ENSSSCT00000026980

RefSeq Acc Id:

ENSSSCP00000046965 ⟸ ENSSSCT00000061316

RefSeq Acc Id:

ENSSSCP00000031350 ⟸ ENSSSCT00000045975

RefSeq Acc Id:

ENSSSCP00000050699 ⟸ ENSSSCT00000057878

Protein Domains

Yip1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000028506	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00030067678	UniProtKB/TrEMBL
	ENSSSCG00050026181	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000045975	ENTREZGENE
	ENSSSCT00000045975.3	UniProtKB/TrEMBL
	ENSSSCT00000057878.3	UniProtKB/TrEMBL
	ENSSSCT00000061316	ENTREZGENE
	ENSSSCT00000061316.3	UniProtKB/TrEMBL
	ENSSSCT00030094640.1	UniProtKB/TrEMBL
	ENSSSCT00030094689.1	UniProtKB/TrEMBL
	ENSSSCT00050035235.1	UniProtKB/TrEMBL
	ENSSSCT00050035257.1	UniProtKB/TrEMBL
InterPro	Yip1	UniProtKB/TrEMBL
	Yip5/YIPF1/YIPF2	UniProtKB/TrEMBL
KEGG Report	ssc:100621520	UniProtKB/TrEMBL
NCBI Gene	YIPF1	ENTREZGENE
PANTHER	PROTEIN YIPF1	UniProtKB/TrEMBL
	PTHR12822	UniProtKB/TrEMBL
Pfam	Yip1	UniProtKB/TrEMBL
UniProt	A0A286ZIK6	ENTREZGENE, UniProtKB/TrEMBL
	A0A287ASC2	ENTREZGENE, UniProtKB/TrEMBL
	A0A287B3M6_PIG	UniProtKB/TrEMBL
	A0A8D0XZ94	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0Y2Y3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:95027	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar