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Gene: CUNH5orf34 (chromosome unknown C5orf34 homolog) Heterocephalus glaber

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Symbol:

CUNH5orf34 (Ensembl: C5orf34)

Name:

chromosome unknown C5orf34 homolog

RGD ID:

18929448

Description:

ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); Neurodevelopmental Disorders (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

uncharacterized protein C5orf34 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	11,700,413 - 11,720,868 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	11,696,985 - 11,721,000 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CUNH5orf34	Naked Mole-Rat	developmental and epileptic encephalopathy		ISO	C5orf34 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:28492532
CUNH5orf34	Naked Mole-Rat	early infantile epileptic encephalopathy		ISO	C5orf34 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:28492532
CUNH5orf34	Naked Mole-Rat	Neurodevelopmental Disorders		ISO	C5orf34 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868

PMID:21993625

CUNH5orf34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	11,700,413 - 11,720,868 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	11,696,985 - 11,721,000 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

C5orf34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	43,486,709 - 43,515,148 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	43,486,709 - 43,515,148 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	43,486,811 - 43,515,250 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	43,522,567 - 43,550,944 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	43,377,936 - 43,406,275 (-)	NCBI		Celera
Cytogenetic Map	5	p12	NCBI
HuRef	5	43,437,926 - 43,466,376 (-)	NCBI		HuRef
CHM1_1	5	43,488,068 - 43,516,540 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	43,739,532 - 43,767,935 (-)	NCBI		T2T-CHM13v2.0

4833420G17Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	119,599,295 - 119,622,656 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	119,599,304 - 119,622,656 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	119,462,015 - 119,486,120 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	119,462,768 - 119,486,120 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	120,251,566 - 120,274,924 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	120,581,645 - 120,604,990 (+)	NCBI		MGSCv36	mm8
Celera	13	123,916,321 - 123,941,603 (+)	NCBI		Celera
Cytogenetic Map	13	D2.3	NCBI
cM Map	13	67.24	NCBI

C2h5orf34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	53,287,353 - 53,309,804 (+)	NCBI		GRCr8
mRatBN7.2	2	51,553,223 - 51,577,090 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	51,555,432 - 51,577,085 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	58,674,322 - 58,696,030 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	56,733,033 - 56,754,742 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	51,667,187 - 51,688,882 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	52,333,396 - 52,355,044 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	52,333,396 - 52,355,042 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	70,696,592 - 70,718,964 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	51,642,381 - 51,664,029 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	51,570,613 - 51,592,260 (+)	NCBI
Celera	2	47,210,389 - 47,232,051 (+)	NCBI		Celera
Cytogenetic Map	2	q15	NCBI

CUNH5orf34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	18,841,517 - 18,862,814 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955446	18,837,488 - 18,862,396 (+)	NCBI	ChiLan1.0	ChiLan1.0

C4H5orf34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	66,808,521 - 66,842,673 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	64,962,147 - 64,991,977 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	66,856,042 - 66,886,158 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	71,907,790 - 71,935,955 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	71,907,790 - 71,935,955 (+)	Ensembl	panpan1.1		panPan2

C4H5orf34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	66,496,210 - 66,538,317 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	66,461,257 - 66,528,051 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	66,256,967 - 66,290,673 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	66,988,663 - 67,022,387 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	66,988,611 - 67,020,514 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	66,746,764 - 66,780,465 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	66,877,423 - 66,911,117 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	67,412,978 - 67,446,684 (+)	NCBI		UU_Cfam_GSD_1.0

CUNH5orf34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	209,800,959 - 209,827,694 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	18,737,628 - 18,764,004 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	18,737,455 - 18,764,177 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C16H5orf34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	28,058,264 - 28,094,452 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	28,060,297 - 28,094,206 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	29,633,610 - 29,654,205 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH5orf34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	42,234,849 - 42,295,683 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	42,273,956 - 42,295,320 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	32,740,349 - 32,768,356 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_004848554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013073488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013073489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021261441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01039562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AHKG01039563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JH169560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000016746 ⟹ ENSHGLP00000016576

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624759	11,700,413 - 11,720,868 (+)	Ensembl

RefSeq Acc Id:

XM_004848554 ⟹ XP_004848611

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624759	11,696,985 - 11,721,000 (+)	NCBI

RefSeq Acc Id:

XM_013073488 ⟹ XP_012928942

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624759	11,696,985 - 11,721,000 (+)	NCBI

RefSeq Acc Id:

XM_013073489 ⟹ XP_012928943

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624759	11,696,985 - 11,721,000 (+)	NCBI

RefSeq Acc Id:

XM_021261441 ⟹ XP_021117100

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624759	11,697,003 - 11,721,000 (+)	NCBI


Protein RefSeqs	XP_004848611	(Get FASTA)	NCBI Sequence Viewer
	XP_012928942	(Get FASTA)	NCBI Sequence Viewer
	XP_012928943	(Get FASTA)	NCBI Sequence Viewer
	XP_021117100	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EHB07074	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000016576

RefSeq Acc Id:	XP_004848611 ⟸ XM_004848554
- Peptide Label:	isoform X2
- UniProtKB:	G5BCR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_012928943 ⟸ XM_013073489
- Peptide Label:	isoform X2
- UniProtKB:	G5BCR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_012928942 ⟸ XM_013073488
- Peptide Label:	isoform X1
- UniProtKB:	A0AAX6QZP7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_021117100 ⟸ XM_021261441
- Peptide Label:	isoform X2
- UniProtKB:	G5BCR3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSHGLP00000016576 ⟸ ENSHGLT00000016746

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000011848	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000016746	ENTREZGENE
InterPro	C5orf34-like	UniProtKB/TrEMBL
	C5orf34-like_2nd	UniProtKB/TrEMBL
	C5orf34-like_dom	UniProtKB/TrEMBL
	DUF4520	UniProtKB/TrEMBL
	DUF4524	UniProtKB/TrEMBL
KEGG Report	hgl:101709841	UniProtKB/TrEMBL
NCBI Gene	CUNH5orf34	ENTREZGENE
PANTHER	ZGC:153352	UniProtKB/TrEMBL
	ZGC:153352	UniProtKB/TrEMBL
Pfam	DUF4520	UniProtKB/TrEMBL
	DUF4524	UniProtKB/TrEMBL
	DUF4524_C	UniProtKB/TrEMBL
	Polo_box_4	UniProtKB/TrEMBL
UniProt	A0AAX6QZP7	ENTREZGENE, UniProtKB/TrEMBL
	G5BCR3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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