Plscr5 (phospholipid scramblase family member 5) - Rat Genome Database

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Gene: Plscr5 (phospholipid scramblase family member 5) Heterocephalus glaber
Analyze
Symbol: Plscr5
Name: phospholipid scramblase family member 5
RGD ID: 18928807
Description: ENCODES a protein that exhibits phospholipid scramblase activity (inferred); INVOLVED IN plasma membrane phospholipid scrambling (inferred); FOUND IN plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473023,549,667 - 23,565,050 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473023,551,467 - 23,565,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Plscr5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473023,549,667 - 23,565,050 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473023,551,467 - 23,565,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PLSCR5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383146,576,555 - 146,605,346 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3146,576,555 - 146,605,346 (-)EnsemblGRCh38hg38GRCh38
GRCh373146,294,342 - 146,323,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363147,786,315 - 147,806,693 (-)NCBINCBI36Build 36hg18NCBI36
Celera3144,720,660 - 144,741,039 (-)NCBICelera
Cytogenetic Map3q24NCBI
HuRef3143,680,464 - 143,700,842 (-)NCBIHuRef
CHM1_13146,266,683 - 146,287,061 (-)NCBICHM1_1
T2T-CHM13v2.03149,331,731 - 149,360,509 (-)NCBIT2T-CHM13v2.0
Plscr5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39992,068,569 - 92,094,589 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl992,074,989 - 92,091,825 (+)EnsemblGRCm39 Ensembl
GRCm38992,186,516 - 92,212,536 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl992,192,936 - 92,209,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv37992,087,774 - 92,104,536 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36992,087,774 - 92,104,536 (+)NCBIMGSCv36mm8
Celera991,780,517 - 91,797,373 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map948.33NCBI
Plscr5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88101,597,207 - 101,618,571 (+)NCBIGRCr8
mRatBN7.2892,717,479 - 92,738,843 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl892,722,600 - 92,738,299 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx898,400,883 - 98,416,577 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0896,600,134 - 96,615,828 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0894,432,845 - 94,448,560 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0899,558,279 - 99,579,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl899,568,958 - 99,579,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0899,042,074 - 99,063,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4897,143,459 - 97,159,158 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera892,241,712 - 92,257,400 (+)NCBICelera
Cytogenetic Map8q31NCBI
Plscr5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547410,855,888 - 10,904,450 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547410,855,958 - 10,903,801 (+)NCBIChiLan1.0ChiLan1.0
PLSCR5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22144,461,879 - 144,490,694 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13144,466,610 - 144,495,425 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03143,593,413 - 143,628,126 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13151,176,200 - 151,210,799 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3151,176,253 - 151,212,156 (-)Ensemblpanpan1.1panPan2
PLSCR5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12341,709,662 - 41,739,638 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2341,681,017 - 41,733,150 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2341,574,886 - 41,604,840 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02342,327,939 - 42,357,931 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2342,331,540 - 42,357,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12341,915,765 - 41,945,917 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02341,990,888 - 42,021,009 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02342,234,122 - 42,264,264 (-)NCBIUU_Cfam_GSD_1.0
Plscr5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560281,019,261 - 81,046,315 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365198,694,575 - 8,712,077 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365198,688,210 - 8,712,104 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLSCR5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1386,928,254 - 86,949,019 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11386,920,326 - 86,954,257 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21394,560,866 - 94,587,178 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLSCR5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11544,096,245 - 44,134,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1544,106,757 - 44,121,238 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604116,985,249 - 17,012,992 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021259254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01001105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000027255   ⟹   ENSHGLP00000027016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473023,549,667 - 23,565,050 (-)Ensembl
RefSeq Acc Id: XM_021259254   ⟹   XP_021114913
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473023,551,467 - 23,565,050 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021114913 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027016
RefSeq Acc Id: XP_021114913   ⟸   XM_021259254
- UniProtKB: A0AAX6T4H8 (UniProtKB/TrEMBL),   G5AQA9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000027016   ⟸   ENSHGLT00000027255


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019213 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027255 ENTREZGENE
InterPro Scramblase UniProtKB/TrEMBL
  Tubby-like_C UniProtKB/TrEMBL
NCBI Gene Plscr5 ENTREZGENE
PANTHER PHOSPHOLIPID SCRAMBLASE FAMILY MEMBER 5 UniProtKB/TrEMBL
  PHOSPHOLIPID SCRAMBLASE-RELATED UniProtKB/TrEMBL
Pfam Scramblase UniProtKB/TrEMBL
Superfamily-SCOP Tubby C-terminal domain-like UniProtKB/TrEMBL
UniProt A0AAX6T4H8 ENTREZGENE, UniProtKB/TrEMBL
  G5AQA9 ENTREZGENE, UniProtKB/TrEMBL