Mmrn1 (multimerin 1) - Rat Genome Database

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Gene: Mmrn1 (multimerin 1) Heterocephalus glaber
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Symbol: Mmrn1
Name: multimerin 1
RGD ID: 18927939
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion mediated by integrin (ortholog); negative regulation of wound healing (ortholog); positive regulation of platelet aggregation (ortholog); ASSOCIATED WITH Lewy body dementia (ortholog); Parkinson's disease 1 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); multimerin complex (ortholog); platelet alpha granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Multimerin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475717,628,421 - 17,724,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475717,652,112 - 17,721,030 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mmrn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475717,628,421 - 17,724,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475717,652,112 - 17,721,030 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MMRN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38489,879,511 - 89,954,614 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl489,879,532 - 89,954,629 (+)EnsemblGRCh38hg38GRCh38
GRCh37490,800,662 - 90,875,765 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36491,035,075 - 91,094,803 (+)NCBINCBI36Build 36hg18NCBI36
Build 34491,173,229 - 91,232,956NCBI
Celera488,113,183 - 88,172,912 (+)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef486,567,087 - 86,626,775 (+)NCBIHuRef
CHM1_1490,792,510 - 90,852,252 (+)NCBICHM1_1
T2T-CHM13v2.0493,210,758 - 93,285,868 (+)NCBIT2T-CHM13v2.0
Mmrn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39660,921,301 - 60,966,362 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl660,901,960 - 60,966,362 (+)EnsemblGRCm39 Ensembl
GRCm38660,944,317 - 60,989,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl660,924,976 - 60,989,378 (+)EnsemblGRCm38mm10GRCm38
MGSCv37660,894,311 - 60,939,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36660,873,938 - 60,918,956 (+)NCBIMGSCv36mm8
Celera663,096,881 - 63,141,936 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map629.22NCBI
Mmrn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8491,205,462 - 91,280,862 (+)NCBIGRCr8
mRatBN7.2489,875,408 - 89,950,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl489,903,174 - 89,950,474 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0490,977,537 - 91,038,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl490,990,088 - 91,038,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04155,798,213 - 155,845,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4489,829,385 - 89,878,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera484,673,299 - 84,733,213 (+)NCBICelera
Cytogenetic Map4q24NCBI
Mmrn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554051,043,656 - 1,095,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554051,043,661 - 1,092,862 (+)NCBIChiLan1.0ChiLan1.0
MMRN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2387,888,671 - 87,969,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1488,150,763 - 88,231,847 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0482,132,874 - 82,254,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1492,892,863 - 92,974,321 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl492,892,824 - 92,974,854 (+)Ensemblpanpan1.1panPan2
MMRN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13213,111,043 - 13,184,681 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3213,110,969 - 13,184,649 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3228,772,422 - 28,846,056 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03213,164,524 - 13,235,071 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3213,175,847 - 13,235,068 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13213,248,879 - 13,322,519 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03213,071,685 - 13,144,552 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03226,768,370 - 26,842,036 (-)NCBIUU_Cfam_GSD_1.0
Mmrn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530128,264,058 - 28,329,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366852,251,978 - 2,291,261 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366852,236,072 - 2,291,636 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMRN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8129,113,966 - 129,173,392 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18129,113,951 - 129,173,413 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28138,500,960 - 138,560,822 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMRN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1738,233,562 - 38,310,006 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl738,250,942 - 38,309,972 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603717,037,358 - 17,097,098 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004976   ⟹   ENSHGLP00000004912
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475717,628,421 - 17,724,327 (+)Ensembl
RefSeq Acc Id: XM_004848078   ⟹   XP_004848135
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475717,652,112 - 17,721,030 (+)NCBI
RefSeq Acc Id: XM_021261078   ⟹   XP_021116737
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475717,652,112 - 17,721,030 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004848135 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116737 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14575 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004912
RefSeq Acc Id: XP_004848135   ⟸   XM_004848078
- Peptide Label: isoform X1
- UniProtKB: G5BZ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116737   ⟸   XM_021261078
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000004912   ⟸   ENSHGLT00000004976


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003604 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004976 ENTREZGENE
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Collagen/C1q_domain UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EMI_domain UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
KEGG Report hgl:101701254 UniProtKB/TrEMBL
NCBI Gene Mmrn1 ENTREZGENE
PANTHER EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
  PTHR15427:SF3 UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  C1Q UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49842 UniProtKB/TrEMBL
UniProt G5BZ64 ENTREZGENE, UniProtKB/TrEMBL