Smim11 (small integral membrane protein 11) - Rat Genome Database

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Gene: Smim11 (small integral membrane protein 11) Heterocephalus glaber
Analyze
Symbol: Smim11
Name: small integral membrane protein 11 (Ensembl:small integral membrane protein 11A)
RGD ID: 18927871
Description: ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small integral membrane protein 11A; Smim11a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474522,558,420 - 22,571,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474522,558,546 - 22,569,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Smim11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474522,558,420 - 22,571,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474522,558,546 - 22,569,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SMIM11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382134,375,507 - 34,389,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2134,375,480 - 34,416,961 (+)EnsemblGRCh38hg38GRCh38
GRCh372135,747,806 - 35,761,449 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362134,669,619 - 34,683,322 (+)NCBINCBI36Build 36hg18NCBI36
Build 342134,669,668 - 34,696,938NCBI
Celera2120,947,319 - 20,961,025 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2121,226,187 - 21,239,896 (+)NCBIHuRef
CHM1_12135,309,998 - 35,323,707 (+)NCBICHM1_1
T2T-CHM13v2.02132,757,557 - 32,771,207 (+)NCBIT2T-CHM13v2.0
Smim11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391692,098,131 - 92,109,929 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1692,098,174 - 92,109,929 (+)EnsemblGRCm39 Ensembl
GRCm381692,301,241 - 92,313,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1692,301,286 - 92,313,041 (+)EnsemblGRCm38mm10GRCm38
MGSCv371692,301,548 - 92,313,286 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361692,190,179 - 92,201,900 (+)NCBIMGSCv36mm8
Celera1693,384,420 - 93,396,163 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1653.55NCBI
Smim11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,019,269 - 45,028,926 (+)NCBIGRCr8
mRatBN7.21131,533,257 - 31,543,002 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1131,532,764 - 31,543,002 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1140,228,002 - 40,237,650 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,899,461 - 32,909,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01132,057,335 - 32,066,998 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01132,450,508 - 32,460,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1132,450,587 - 32,460,238 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01136,054,365 - 36,064,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41132,294,155 - 32,303,989 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1131,187,211 - 31,196,830 (+)NCBICelera
Cytogenetic Map11q11NCBI
Smim11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540733,740,552 - 33,750,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540733,740,552 - 33,750,974 (+)NCBIChiLan1.0ChiLan1.0
SMIM11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22230,491,718 - 30,521,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12125,352,077 - 25,379,832 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02120,742,420 - 20,771,205 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12134,112,409 - 34,139,740 (+)NCBIpanpan1.1PanPan1.1panPan2
SMIM11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13129,781,693 - 29,818,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3128,881,256 - 28,918,658 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03129,082,352 - 29,102,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3129,082,643 - 29,102,870 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13128,948,734 - 28,969,223 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03128,963,471 - 28,983,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03129,462,626 - 29,483,116 (+)NCBIUU_Cfam_GSD_1.0
Smim11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497129,402,421 - 29,412,214 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365008,055,588 - 8,066,060 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365008,055,609 - 8,065,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,985,464 - 197,998,282 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,985,268 - 197,998,289 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213207,813,809 - 207,826,829 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1257,814,536 - 57,828,761 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666071316,980 - 331,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012922   ⟹   ENSHGLP00000012785
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474522,558,420 - 22,571,802 (+)Ensembl
RefSeq Acc Id: XM_004842334   ⟹   XP_004842391
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474522,562,128 - 22,569,380 (+)NCBI
RefSeq Acc Id: XM_004842335   ⟹   XP_004842392
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474522,558,546 - 22,569,380 (+)NCBI
RefSeq Acc Id: XM_004842336   ⟹   XP_004842393
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474522,558,546 - 22,569,380 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842391 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842392 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842393 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012785
RefSeq Acc Id: XP_004842392   ⟸   XM_004842335
RefSeq Acc Id: XP_004842393   ⟸   XM_004842336
RefSeq Acc Id: XP_004842391   ⟸   XM_004842334
Ensembl Acc Id: ENSHGLP00000012785   ⟸   ENSHGLT00000012922


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009145 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012922 ENTREZGENE
NCBI Gene Smim11a ENTREZGENE
UniProt A0AAX6P317_HETGA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-06 Smim11  small integral membrane protein 11  Smim11a  small integral membrane protein 11A  Symbol and/or name change 5135510 APPROVED