Ccl16 (C-C motif chemokine ligand 16) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ccl16 (C-C motif chemokine ligand 16) Heterocephalus glaber
Analyze
Symbol: Ccl16
Name: C-C motif chemokine ligand 16
RGD ID: 18925436
Description: ENCODES a protein that exhibits chemoattractant activity (ortholog); INVOLVED IN chemotaxis (inferred); eosinophil chemotaxis (inferred); immune response (inferred); ASSOCIATED WITH Cytomegalovirus Infections (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine 16
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248753,366,502 - 3,370,961 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248753,368,317 - 3,370,919 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccl16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248753,366,502 - 3,370,961 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248753,368,317 - 3,370,919 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCL16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,976,499 - 35,981,497 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,976,493 - 35,981,497 (-)EnsemblGRCh38hg38GRCh38
GRCh371734,303,535 - 34,308,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,327,648 - 31,332,636 (-)NCBINCBI36Build 36hg18NCBI36
Build 341731,327,647 - 31,332,636NCBI
Celera1731,213,091 - 31,218,079 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,488,547 - 30,493,540 (-)NCBIHuRef
CHM1_11734,368,070 - 34,373,058 (-)NCBICHM1_1
T2T-CHM13v2.01736,924,403 - 36,931,524 (-)NCBIT2T-CHM13v2.0
Ccl16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495548110,332,022 - 10,334,781 (-)NCBIChiLan1.0ChiLan1.0
CCL16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,496,446 - 28,503,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,375,453 - 30,382,334 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,814,498 - 20,818,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,109,973 - 21,114,054 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,109,973 - 21,114,054 (+)Ensemblpanpan1.1panPan2
CCL16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,787,658 - 37,791,132 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,787,680 - 37,791,037 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,010,337 - 37,013,811 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,597,373 - 38,600,847 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1937,380,600 - 37,384,074 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,665,975 - 37,669,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,753,320 - 37,756,794 (+)NCBIUU_Cfam_GSD_1.0
Ccl16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,786,704 - 36,790,139 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936490285,046 - 288,231 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,618,414 - 39,621,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,618,187 - 39,621,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,187,453 - 41,190,824 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008029   ⟹   ENSHGLP00000007941
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248753,366,502 - 3,370,961 (-)Ensembl
RefSeq Acc Id: XM_004870664   ⟹   XP_004870721
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248753,368,317 - 3,370,919 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004870721 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05103 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007941
Reference Protein Sequences
RefSeq Acc Id: XP_004870721   ⟸   XM_004870664
- UniProtKB: G5B742 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000007941   ⟸   ENSHGLT00000008029


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005751 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008029 ENTREZGENE
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
NCBI Gene Ccl16 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 16 UniProtKB/TrEMBL
  SMALL INDUCIBLE CYTOKINE A UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP Interleukin 8-like chemokines UniProtKB/TrEMBL
UniProt G5B742 ENTREZGENE, UniProtKB/TrEMBL