Tjap1 (tight junction associated protein 1) - Rat Genome Database

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Gene: Tjap1 (tight junction associated protein 1) Heterocephalus glaber
Analyze
Symbol: Tjap1
Name: tight junction associated protein 1
RGD ID: 18925017
Description: INVOLVED IN Golgi organization (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cytoplasm (inferred); endosome (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Tight junction-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,135,274 - 16,144,798 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,138,558 - 16,160,798 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
Golgi organization  (IEA,ISO)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Tjap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,135,274 - 16,144,798 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,138,558 - 16,160,798 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TJAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,477,570 - 43,506,554 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,477,523 - 43,506,556 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,445,308 - 43,474,292 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,553,289 - 43,582,269 (+)NCBINCBI36Build 36hg18NCBI36
Build 34643,553,288 - 43,582,269NCBI
Celera644,996,876 - 45,025,915 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,163,302 - 43,192,330 (+)NCBIHuRef
CHM1_1643,448,397 - 43,477,426 (+)NCBICHM1_1
T2T-CHM13v2.0643,306,318 - 43,335,293 (+)NCBIT2T-CHM13v2.0
Tjap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,568,777 - 46,593,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,568,777 - 46,593,952 (-)EnsemblGRCm39 Ensembl
GRCm381746,257,851 - 46,283,063 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,257,851 - 46,283,026 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,394,825 - 46,419,962 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,721,457 - 45,746,594 (-)NCBIMGSCv36mm8
Celera1749,690,975 - 49,716,096 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Tjap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,198,984 - 22,223,201 (+)NCBIGRCr8
mRatBN7.2914,701,418 - 14,725,623 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,701,468 - 14,725,751 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,285,675 - 23,309,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,348,063 - 28,372,023 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,649,062 - 26,673,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,086,452 - 17,110,770 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,086,475 - 17,110,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,983,140 - 16,007,447 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,264,023 - 10,288,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,259,315 - 10,285,514 (+)NCBI
Celera912,448,777 - 12,473,073 (+)NCBICelera
Cytogenetic Map9q12NCBI
Tjap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,314,416 - 9,336,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,314,472 - 9,337,021 (+)NCBIChiLan1.0ChiLan1.0
TJAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,977,262 - 58,006,754 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,847,052 - 53,876,551 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,069,119 - 43,098,623 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,360,781 - 44,389,734 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,360,781 - 44,392,919 (+)Ensemblpanpan1.1panPan2
TJAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,944,445 - 11,968,660 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,944,244 - 11,968,998 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1211,970,696 - 11,994,874 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,428,118 - 12,452,301 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,428,182 - 12,452,288 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,953,560 - 11,977,738 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,040,441 - 12,064,616 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,133,924 - 12,158,108 (+)NCBIUU_Cfam_GSD_1.0
Tjap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,437,079 - 47,462,385 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,498,459 - 16,504,474 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,497,814 - 16,523,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TJAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,475,243 - 38,501,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,475,181 - 38,501,532 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,078,695 - 44,082,575 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TJAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,652,841 - 28,681,806 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,651,418 - 28,660,013 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,533,185 - 43,562,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027391   ⟹   ENSHGLP00000027150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475416,135,274 - 16,144,798 (-)Ensembl
RefSeq Acc Id: XM_013072978   ⟹   XP_012928432
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,138,558 - 16,160,792 (-)NCBI
RefSeq Acc Id: XM_021259764   ⟹   XP_021115423
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,138,558 - 16,160,798 (-)NCBI
RefSeq Acc Id: XM_021259765   ⟹   XP_021115424
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,138,558 - 16,160,798 (-)NCBI
RefSeq Acc Id: XM_021259766   ⟹   XP_021115425
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,138,558 - 16,160,798 (-)NCBI
RefSeq Acc Id: XM_021259767   ⟹   XP_021115426
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475416,138,558 - 16,144,825 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021115425   ⟸   XM_021259766
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021115423   ⟸   XM_021259764
- Peptide Label: isoform X1
- UniProtKB: G5BNM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115424   ⟸   XM_021259765
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JUR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928432   ⟸   XM_013072978
- Peptide Label: isoform X1
- UniProtKB: G5BNM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115426   ⟸   XM_021259767
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000027150   ⟸   ENSHGLT00000027391


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019311 Ensembl, ENTREZGENE
  ENSHGLG00000050716 UniProtKB/TrEMBL
  ENSHGLG00100041168 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027391 ENTREZGENE
  ENSHGLT00000070829 UniProtKB/TrEMBL
  ENSHGLT00000072135 UniProtKB/TrEMBL
  ENSHGLT00100085782 UniProtKB/TrEMBL
  ENSHGLT00100087691 UniProtKB/TrEMBL
InterPro Tjap1/BEGAIN UniProtKB/TrEMBL
  Tjap1_dom UniProtKB/TrEMBL
KEGG Report hgl:101711889 UniProtKB/TrEMBL
NCBI Gene Tjap1 ENTREZGENE
PANTHER PTHR28664 UniProtKB/TrEMBL
  PTHR28664:SF3 UniProtKB/TrEMBL
Pfam Pilt UniProtKB/TrEMBL
UniProt A0A0P6JUR6 ENTREZGENE, UniProtKB/TrEMBL
  G5BNM5 ENTREZGENE, UniProtKB/TrEMBL