Ube2o (ubiquitin conjugating enzyme E2 O) - Rat Genome Database

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Gene: Ube2o (ubiquitin conjugating enzyme E2 O) Heterocephalus glaber
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Symbol: Ube2o
Name: ubiquitin conjugating enzyme E2 O
RGD ID: 18924329
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN positive regulation of BMP signaling pathway (ortholog); protein K63-linked ubiquitination (ortholog); protein monoubiquitination (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: (E3-independent) E2 ubiquitin-conjugating enzyme
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,258,164 - 6,317,874 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,258,097 - 6,317,833 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ube2oNaked Mole-Ratcytoplasm located_inISOUBE2O (Homo sapiens)9068941 PMID:24703950FlyBasePMID:24703950
Ube2oNaked Mole-Ratnuclear body located_inISOUBE2O (Homo sapiens)9068941 HPAGO_REF:0000052
Ube2oNaked Mole-Ratnucleoplasm located_inISOUBE2O (Homo sapiens)9068941 HPAGO_REF:0000052
Ube2oNaked Mole-Ratnucleus located_inISOUBE2O (Homo sapiens)9068941 PMID:24703950UniProtPMID:24703950

Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows



Ube2o
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,258,164 - 6,317,874 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,258,097 - 6,317,833 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UBE2O
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,389,456 - 76,453,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,389,456 - 76,453,152 (-)EnsemblGRCh38hg38GRCh38
GRCh371774,385,537 - 74,449,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,897,491 - 71,960,883 (-)NCBINCBI36Build 36hg18NCBI36
Celera1770,977,988 - 71,041,666 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,814,102 - 69,877,195 (-)NCBIHuRef
CHM1_11774,450,690 - 74,514,286 (-)NCBICHM1_1
T2T-CHM13v2.01777,286,031 - 77,349,733 (-)NCBIT2T-CHM13v2.0
Ube2o
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,428,500 - 116,472,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,428,566 - 116,472,273 (-)EnsemblGRCm39 Ensembl
GRCm3811116,537,740 - 116,581,503 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,537,740 - 116,581,447 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711116,399,067 - 116,442,761 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,353,843 - 116,397,537 (-)NCBIMGSCv36mm8
Celera11128,306,292 - 128,351,436 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.42NCBI
Ube2o
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,264,418 - 102,311,578 (-)NCBIGRCr8
mRatBN7.210101,765,572 - 101,812,736 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,766,005 - 101,812,899 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010105,505,721 - 105,553,167 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,506,955 - 105,552,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,169,307 - 105,216,736 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,646,738 - 106,694,554 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,662,853 - 106,709,058 (-)NCBI
Celera10100,337,880 - 100,384,980 (-)NCBICelera
Cytogenetic Map10q32.2NCBI
Ube2o
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,842,772 - 5,901,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,842,772 - 5,901,122 (+)NCBIChiLan1.0ChiLan1.0
UBE2O
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,432,530 - 92,495,814 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,257,683 - 97,321,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,337,622 - 70,400,967 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,888,058 - 75,950,983 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,889,533 - 75,952,051 (-)Ensemblpanpan1.1panPan2
UBE2O
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,294,192 - 4,310,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,254,649 - 4,310,589 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,935,918 - 4,992,228 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,930,477 - 4,983,778 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,930,477 - 4,987,555 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,955,657 - 5,012,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,075,477 - 5,131,793 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,156,762 - 5,213,079 (+)NCBIUU_Cfam_GSD_1.0
Ube2o
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,869,021 - 4,921,771 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,490,198 - 1,542,943 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,490,257 - 1,554,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2O
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,055,065 - 5,114,123 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,055,091 - 5,114,127 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,981,800 - 5,017,871 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2O
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,223,249 - 45,288,545 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,223,254 - 45,288,543 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607715,964,908 - 16,030,392 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






Ensembl Acc Id: ENSHGLT00000008863   ⟹   ENSHGLP00000008768
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248016,258,164 - 6,317,874 (-)Ensembl
RefSeq Acc Id: XM_004860754   ⟹   XP_004860811
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,258,097 - 6,317,833 (-)NCBI
RefSeq Acc Id: XM_013078178   ⟹   XP_012933632
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,258,097 - 6,317,833 (-)NCBI
RefSeq Acc Id: XM_021241228   ⟹   XP_021096887
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248016,258,097 - 6,317,833 (-)NCBI
Protein RefSeqs XP_004860811 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933632 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096887 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008768
RefSeq Acc Id: XP_021096887   ⟸   XM_021241228
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RJT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860811   ⟸   XM_004860754
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PX84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933632   ⟸   XM_013078178
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R2K8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008768   ⟸   ENSHGLT00000008863



Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000006311 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008863 ENTREZGENE
NCBI Gene Ube2o ENTREZGENE
UniProt A0AAX6PX84 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R2K8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RJT7 ENTREZGENE, UniProtKB/TrEMBL