Pspc1 (paraspeckle component 1) - Rat Genome Database

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Gene: Pspc1 (paraspeckle component 1) Heterocephalus glaber
Analyze
Symbol: Pspc1
Name: paraspeckle component 1
RGD ID: 18923908
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN activation of innate immune response (inferred); membraneless organelle assembly (inferred); negative regulation of DNA-templated transcription (inferred); FOUND IN paraspeckles (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,906,063 - 17,978,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,906,700 - 17,978,885 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pspc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477617,906,063 - 17,978,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477617,906,700 - 17,978,885 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PSPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,671,205 - 19,782,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,674,752 - 19,783,019 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,248,892 - 20,357,085 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,146,896 - 19,255,083 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,147,527 - 19,255,082NCBI
Celera131,310,734 - 1,418,914 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,053,841 - 1,162,259 (-)NCBIHuRef
CHM1_11320,216,795 - 20,325,586 (-)NCBICHM1_1
T2T-CHM13v2.01318,867,270 - 18,979,203 (-)NCBIT2T-CHM13v2.0
Pspc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,959,898 - 57,015,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,958,167 - 57,015,773 (-)EnsemblGRCm39 Ensembl
GRCm381456,722,441 - 56,778,318 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,720,710 - 56,778,316 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,341,286 - 57,397,153 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,676,559 - 55,732,426 (-)NCBIMGSCv36mm8
Celera1454,520,204 - 54,576,103 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.4NCBI
Pspc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,941,445 - 35,027,460 (-)NCBIGRCr8
mRatBN7.21530,828,617 - 30,911,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,828,626 - 30,911,202 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,843,198 - 32,902,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,993,854 - 34,053,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,251,952 - 32,311,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,946,914 - 37,030,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,950,257 - 37,030,281 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,799,244 - 40,883,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,718,357 - 35,779,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,734,056 - 35,794,839 (-)NCBI
Celera1530,565,581 - 30,624,899 (-)NCBICelera
Cytogenetic Map15p12NCBI
Pspc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497575,340 - 642,809 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497574,678 - 641,885 (-)NCBIChiLan1.0ChiLan1.0
PSPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,304,282 - 19,410,858 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,416,794 - 10,522,261 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,001,131 - 1,106,627 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,319,242 - 19,424,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,347,276 - 19,428,997 (-)Ensemblpanpan1.1panPan2
PSPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,287,827 - 18,361,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,287,899 - 18,359,553 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,317,277 - 18,391,326 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,425,772 - 18,499,922 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,425,958 - 18,497,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,291,628 - 18,365,647 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,303,745 - 18,377,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,360,192 - 18,434,592 (+)NCBIUU_Cfam_GSD_1.0
Pspc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,329,144 - 120,422,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,876,475 - 1,967,662 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,876,726 - 1,941,705 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11482,564 - 572,090 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111477,010 - 572,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,908,816 - 86,971,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.131,160,227 - 1,232,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605743,304,564 - 43,413,173 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026674   ⟹   ENSHGLP00000026438
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477617,906,063 - 17,978,098 (+)Ensembl
RefSeq Acc Id: XM_004854893   ⟹   XP_004854950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477617,906,700 - 17,978,885 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854950 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026438
  ENSHGLP00100056461
GenBank Protein JAN99833 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004854950   ⟸   XM_004854893
- UniProtKB: A0A0P6J6E5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026438   ⟸   ENSHGLT00000026674


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018811 Ensembl, ENTREZGENE
  ENSHGLG00100007962 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026674 ENTREZGENE
  ENSHGLT00100049158 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  6.10.250.1170 UniProtKB/TrEMBL
InterPro NOPS UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PSP1_RRM1 UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report hgl:101714198 UniProtKB/TrEMBL
NCBI Gene Pspc1 ENTREZGENE
PANTHER PARASPECKLE COMPONENT 1 UniProtKB/TrEMBL
  RNA RECOGNITION MOTIF-CONTAINING UniProtKB/TrEMBL
Pfam NOPS UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0P6J6E5 ENTREZGENE, UniProtKB/TrEMBL