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Gene: Pspc1 (paraspeckle component 1) Rattus norvegicus
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Symbol: Pspc1
Name: paraspeckle component 1
Description: Predicted to have E-box binding activity and RNA binding activity. Predicted to be involved in activation of innate immune response; negative regulation of transcription, DNA-templated; and regulation of circadian rhythm. Predicted to localize to the fibrillar center and paraspeckles. Orthologous to human PSPC1 (paraspeckle component 1); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC305910; MGC116378; paraspeckle protein 1
Orthologs:
Homo sapiens (human) : PSPC1 (paraspeckle component 1)  HGNC  Alliance
Mus musculus (house mouse) : Pspc1 (paraspeckle protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pspc1 (paraspeckle component 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PSPC1 (paraspeckle component 1)
Canis lupus familiaris (dog) : PSPC1 (paraspeckle component 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pspc1 (paraspeckle component 1)
Sus scrofa (pig) : PSPC1 (paraspeckle component 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01536,946,914 - 37,030,273 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01540,799,244 - 40,883,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,718,357 - 35,779,139 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11535,734,056 - 35,794,839 (-)NCBI
Celera1530,565,581 - 30,624,899 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pspc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310122
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.