Sbds (SBDS ribosome maturation factor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sbds (SBDS ribosome maturation factor) Heterocephalus glaber
Analyze
Symbol: Sbds
Name: SBDS ribosome maturation factor
RGD ID: 18923693
Description: ENCODES a protein that exhibits microtubule binding (inferred); ribosome binding (inferred); rRNA binding (inferred); INVOLVED IN inner cell mass cell proliferation (ortholog); ASSOCIATED WITH Anodontia of Permanent Dentition (ortholog); aplastic anemia (ortholog); argininosuccinic aciduria (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ribosome maturation protein SBDS; SBDS, ribosome assembly guanine nucleotide exchange factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,734,546 - 8,740,652 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,734,547 - 8,740,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)
cytosol  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
spindle  (IEA)
spindle pole  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Sbds
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,734,546 - 8,740,652 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,734,547 - 8,740,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SBDS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,987,680 - 66,995,586 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,987,680 - 66,995,693 (-)EnsemblGRCh38hg38GRCh38
GRCh37766,452,667 - 66,460,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36766,090,125 - 66,098,023 (-)NCBINCBI36Build 36hg18NCBI36
Build 34765,896,839 - 65,904,738NCBI
Celera765,655,621 - 65,663,519 (+)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef762,635,769 - 62,643,913 (-)NCBIHuRef
CHM1_1766,547,913 - 66,555,811 (-)NCBICHM1_1
T2T-CHM13v2.0768,207,353 - 68,215,259 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,790,252 - 65,798,150 (-)NCBI
Sbds
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,274,573 - 130,284,371 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,274,572 - 130,284,371 (-)EnsemblGRCm39 Ensembl
GRCm385130,245,732 - 130,255,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,245,731 - 130,255,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,721,602 - 130,731,332 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,530,435 - 130,540,165 (-)NCBIMGSCv36mm8
Celera5127,258,662 - 127,268,390 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.97NCBI
Sbds
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,056,649 - 32,065,816 (+)NCBIGRCr8
mRatBN7.21226,420,410 - 26,429,650 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,420,414 - 26,429,649 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,568,673 - 27,577,829 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,179,181 - 28,188,337 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,237,377 - 27,246,531 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,921,443 - 29,930,602 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,921,443 - 29,930,600 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,858,315 - 31,867,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,457,313 - 27,466,472 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,320,528 - 27,329,686 (+)NCBI
Celera1228,134,732 - 28,143,891 (+)NCBICelera
Cytogenetic Map12q12NCBI
Sbds
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554568,773,917 - 8,782,427 (-)NCBIChiLan1.0ChiLan1.0
LOC100992172
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2682,280,977 - 82,289,035 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17130,608,130 - 130,616,114 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0759,090,343 - 59,098,332 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1774,022,350 - 74,030,407 (-)NCBIpanpan1.1PanPan1.1panPan2
SBDS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,256,087 - 1,263,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,256,546 - 1,263,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,955,741 - 2,962,546 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.061,061,193 - 1,067,977 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl61,061,200 - 1,068,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16996,162 - 1,003,265 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06997,957 - 1,004,762 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,169,768 - 1,176,554 (-)NCBIUU_Cfam_GSD_1.0
Sbds
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,706,525 - 126,711,623 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365437,324,748 - 7,329,774 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SBDS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,161,580 - 16,169,453 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,161,524 - 16,168,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,408,130 - 16,415,224 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SBDS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,527,395 - 2,535,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl282,527,020 - 2,535,147 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607014,081,812 - 14,089,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000013669   ⟹   ENSHGLP00000013528
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247408,734,546 - 8,740,652 (-)Ensembl
RefSeq Acc Id: XM_004840000   ⟹   XP_004840057
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247408,734,547 - 8,740,634 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004840057 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB09182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013528
  ENSHGLP00100015328
GenBank Protein JAN96280 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004840057   ⟸   XM_004840000
- UniProtKB: G5BIS1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013528   ⟸   ENSHGLT00000013669


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009671 Ensembl, ENTREZGENE
  ENSHGLG00100011332 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013669 ENTREZGENE
  ENSHGLT00100015496 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.900 UniProtKB/TrEMBL
  3.30.1250.10 UniProtKB/TrEMBL
  3.30.70.240 UniProtKB/TrEMBL
InterPro Ribosome_mat_SBDS_CS UniProtKB/TrEMBL
  Ribosome_mat_SBDS_N_sf UniProtKB/TrEMBL
  Ribosome_mat_Sdo1/SBDS_C UniProtKB/TrEMBL
  Ribosome_mat_Sdo1/SBDS_N UniProtKB/TrEMBL
  Sdo1/SBDS UniProtKB/TrEMBL
  Sdo1/SBDS-like UniProtKB/TrEMBL
  SDO1/SBDS_C UniProtKB/TrEMBL
  Sdo1/SBDS_central_sf UniProtKB/TrEMBL
KEGG Report hgl:101714934 UniProtKB/TrEMBL
NCBI Gene Sbds ENTREZGENE
PANTHER PTHR10927 UniProtKB/TrEMBL
  RIBOSOME MATURATION PROTEIN SBDS UniProtKB/TrEMBL
Pfam SBDS UniProtKB/TrEMBL
  SBDS_C UniProtKB/TrEMBL
  SBDS_C UniProtKB/TrEMBL
PROSITE UPF0023 UniProtKB/TrEMBL
Superfamily-SCOP SSF109728 UniProtKB/TrEMBL
  SSF89895 UniProtKB/TrEMBL
UniProt G5BIS1 ENTREZGENE, UniProtKB/TrEMBL