SBDS (SBDS ribosome maturation factor) - Rat Genome Database

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Gene: SBDS (SBDS ribosome maturation factor) Pan paniscus
Analyze
Symbol: SBDS
Name: SBDS ribosome maturation factor
RGD ID: 11928694
Description: ENCODES a protein that exhibits microtubule binding (ortholog); ribosome binding (ortholog); rRNA binding (ortholog); INVOLVED IN bone marrow development (ortholog); bone mineralization (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); argininosuccinic aciduria (ortholog); Dwarfism (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribosome maturation protein SBDS; SBDS ribosome assembly guanine nucleotide exchange factor; SBDS, ribosome assembly guanine nucleotide exchange factor; SBDS, ribosome maturation factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1774,022,350 - 74,030,407 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0759,090,343 - 59,098,332 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)
spindle pole  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
SBDS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1774,022,350 - 74,030,407 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0759,090,343 - 59,098,332 (+)NCBIMhudiblu_PPA_v0panPan3
SBDS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,987,680 - 66,995,586 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl766,987,680 - 66,995,586 (-)EnsemblGRCh38hg38GRCh38
GRCh37766,452,667 - 66,460,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36766,090,125 - 66,098,023 (-)NCBINCBI36hg18NCBI36
Build 34765,896,839 - 65,904,738NCBI
Celera765,655,621 - 65,663,519 (+)NCBI
Cytogenetic Map7q11.21NCBI
HuRef762,635,769 - 62,643,913 (-)NCBIHuRef
CHM1_1766,547,913 - 66,555,811 (-)NCBICHM1_1
CRA_TCAGchr7v2765,790,252 - 65,798,150 (-)NCBI
Sbds
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,274,573 - 130,284,371 (-)NCBIGRCm39mm39
GRCm39 Ensembl5130,274,572 - 130,284,371 (-)Ensembl
GRCm385130,245,732 - 130,255,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,245,731 - 130,255,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,721,602 - 130,731,332 (-)NCBIGRCm37mm9NCBIm37
MGSCv365130,530,435 - 130,540,165 (-)NCBImm8
Celera5127,258,662 - 127,268,390 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
Sbds
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21226,420,410 - 26,429,650 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1226,420,414 - 26,429,649 (+)Ensembl
Rnor_6.01229,921,443 - 29,930,602 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,921,443 - 29,930,600 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,858,315 - 31,867,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,457,313 - 27,466,472 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11227,320,528 - 27,329,686 (+)NCBI
Celera1228,134,732 - 28,143,891 (+)NCBICelera
Cytogenetic Map12q12NCBI
Sbds
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554568,773,917 - 8,782,427 (-)NCBIChiLan1.0ChiLan1.0
SBDS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,256,087 - 1,263,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,256,546 - 1,263,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,955,741 - 2,962,546 (-)NCBI
ROS_Cfam_1.061,061,193 - 1,067,977 (-)NCBI
UMICH_Zoey_3.16996,162 - 1,003,265 (-)NCBI
UNSW_CanFamBas_1.06997,957 - 1,004,762 (-)NCBI
UU_Cfam_GSD_1.061,169,768 - 1,176,554 (-)NCBI
Sbds
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,706,525 - 126,711,623 (-)NCBI
SpeTri2.0NW_0049365437,324,748 - 7,329,774 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SBDS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,161,557 - 16,187,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,161,524 - 16,168,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,408,130 - 16,415,224 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SBDS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,527,395 - 2,535,152 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl282,527,020 - 2,535,147 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607014,081,812 - 14,089,973 (+)NCBIVero_WHO_p1.0
Sbds
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247408,734,547 - 8,740,634 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003814524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003814524   ⟹   XP_003814572
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1774,022,350 - 74,030,407 (-)NCBI
Mhudiblu_PPA_v0759,090,343 - 59,098,332 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003814572 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003814572   ⟸   XM_003814524
- Sequence:
Protein Domains
SBDS   SBDS_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043889 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000042675 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065605 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.900 UniProtKB/TrEMBL
  3.30.1250.10 UniProtKB/TrEMBL
InterPro Ribosome_mat_SBDS_CS UniProtKB/TrEMBL
  Ribosome_mat_SBDS_N_sf UniProtKB/TrEMBL
  Ribosome_mat_Sdo1/SBDS_C UniProtKB/TrEMBL
  Ribosome_mat_Sdo1/SBDS_N UniProtKB/TrEMBL
  Sdo1/SBDS UniProtKB/TrEMBL
  Sdo1/SBDS-like UniProtKB/TrEMBL
  Sdo1/SBDS_central_sf UniProtKB/TrEMBL
KEGG Report pps:100992172 UniProtKB/TrEMBL
NCBI Gene SBDS ENTREZGENE
PANTHER PTHR10927 UniProtKB/TrEMBL
Pfam SBDS UniProtKB/TrEMBL
  SBDS_C UniProtKB/TrEMBL
PROSITE UPF0023 UniProtKB/TrEMBL
Superfamily-SCOP SSF109728 UniProtKB/TrEMBL
  SSF89895 UniProtKB/TrEMBL
TIGRFAMs RNA_SBDS UniProtKB/TrEMBL
UniProt A0A2R9CL09_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 SBDS  SBDS ribosome maturation factor    SBDS, ribosome maturation factor  Symbol and/or name change 5135510 APPROVED
2017-05-02 SBDS  SBDS, ribosome maturation factor    SBDS, ribosome assembly guanine nucleotide exchange factor  Symbol and/or name change 5135510 APPROVED
2017-03-08 SBDS  SBDS, ribosome assembly guanine nucleotide exchange factor    SBDS ribosome assembly guanine nucleotide exchange factor  Symbol and/or name change 5135510 APPROVED