Tinagl1 (tubulointerstitial nephritis antigen like 1) - Rat Genome Database

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Gene: Tinagl1 (tubulointerstitial nephritis antigen like 1) Heterocephalus glaber
Analyze
Symbol: Tinagl1
Name: tubulointerstitial nephritis antigen like 1
RGD ID: 18923688
Description: ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); laminin binding (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tubulointerstitial nephritis antigen-like; Tubulointerstitial nephritis antigen-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,831,176 - 14,842,658 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,831,257 - 14,840,689 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA,ISO)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tinagl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,831,176 - 14,842,658 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,831,257 - 14,840,689 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TINAGL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,576,515 - 31,587,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,576,485 - 31,587,686 (+)EnsemblGRCh38hg38GRCh38
GRCh37132,042,116 - 32,053,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,814,747 - 31,825,874 (+)NCBINCBI36Build 36hg18NCBI36
Build 34131,711,252 - 31,722,378NCBI
Celera130,311,348 - 30,322,513 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef130,159,667 - 30,170,714 (+)NCBIHuRef
CHM1_1132,157,872 - 32,169,075 (+)NCBICHM1_1
T2T-CHM13v2.0131,434,200 - 31,445,387 (+)NCBIT2T-CHM13v2.0
Tinagl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,059,393 - 130,068,915 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,058,247 - 130,068,915 (-)EnsemblGRCm39 Ensembl
GRCm384130,165,600 - 130,175,122 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,164,454 - 130,175,122 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,842,844 - 129,852,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,668,023 - 129,677,426 (-)NCBIMGSCv36mm8
Celera4128,500,939 - 128,510,462 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Tinagl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,797,884 - 147,807,925 (-)NCBIGRCr8
mRatBN7.25142,513,710 - 142,523,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,513,714 - 142,523,720 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,214,476 - 145,223,855 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05146,984,290 - 146,993,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05146,981,656 - 146,991,034 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,382,702 - 148,392,729 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,382,706 - 148,392,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,101,199 - 152,111,202 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,198,274 - 149,207,653 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,208,312 - 149,217,692 (-)NCBI
Celera5140,981,392 - 140,990,771 (-)NCBICelera
Cytogenetic Map5q36NCBI
Tinagl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,995,902 - 10,007,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,995,658 - 10,007,418 (+)NCBIChiLan1.0ChiLan1.0
TINAGL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,244,699 - 195,255,858 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,363,492 - 194,374,657 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,857,700 - 30,868,861 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,878,090 - 31,888,934 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,878,090 - 31,888,934 (+)Ensemblpanpan1.1panPan2
TINAGL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,521,201 - 69,531,185 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,502,130 - 69,531,075 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,099,984 - 66,109,974 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,086,063 - 70,096,042 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,067,066 - 70,095,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,921,742 - 66,931,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,918,218 - 67,928,183 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,917,682 - 68,927,640 (-)NCBIUU_Cfam_GSD_1.0
Tinagl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,879,812 - 48,889,359 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,704,570 - 14,714,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,704,401 - 14,714,110 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TINAGL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,095,672 - 88,112,761 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,095,650 - 88,106,092 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,806,767 - 81,821,190 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TINAGL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,284,761 - 101,295,511 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,285,350 - 101,294,857 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,395,459 - 15,406,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000018270   ⟹   ENSHGLP00000018093
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476414,831,176 - 14,842,658 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000018271   ⟹   ENSHGLP00000018094
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476414,831,912 - 14,840,280 (+)Ensembl
RefSeq Acc Id: XM_004850815   ⟹   XP_004850872
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,831,257 - 14,840,689 (+)NCBI
RefSeq Acc Id: XM_004850816   ⟹   XP_004850873
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,831,257 - 14,840,689 (+)NCBI
RefSeq Acc Id: XM_021263238   ⟹   XP_021118897
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476414,831,257 - 14,840,689 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850872 (Get FASTA)   NCBI Sequence Viewer  
  XP_004850873 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118897 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12866 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018093
  ENSHGLP00000018094
  ENSHGLP00000044030
GenBank Protein JAO01597 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004850873   ⟸   XM_004850816
- Peptide Label: isoform X1
- UniProtKB: G5BUA5 (UniProtKB/TrEMBL),   A0A0P6JBA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850872   ⟸   XM_004850815
- Peptide Label: isoform X1
- UniProtKB: G5BUA5 (UniProtKB/TrEMBL),   A0A0P6JBA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118897   ⟸   XM_021263238
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JBA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018093   ⟸   ENSHGLT00000018270
RefSeq Acc Id: ENSHGLP00000018094   ⟸   ENSHGLT00000018271


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012932 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000018270 ENTREZGENE
  ENSHGLT00000018271 ENTREZGENE
  ENSHGLT00000087001 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Pept_asp_AS UniProtKB/TrEMBL
  Pept_his_AS UniProtKB/TrEMBL
  Peptidase_C1A UniProtKB/TrEMBL
  Peptidase_C1A_C UniProtKB/TrEMBL
  Somatomedin_B_dom UniProtKB/TrEMBL
KEGG Report hgl:101703258 UniProtKB/TrEMBL
NCBI Gene Tinagl1 ENTREZGENE
PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED UniProtKB/TrEMBL
  TUBULOINTERSTITIAL NEPHRITIS ANTIGEN-LIKE UniProtKB/TrEMBL
Pfam Peptidase_C1 UniProtKB/TrEMBL
PROSITE SMB_1 UniProtKB/TrEMBL
  SMB_2 UniProtKB/TrEMBL
  THIOL_PROTEASE_ASN UniProtKB/TrEMBL
  THIOL_PROTEASE_HIS UniProtKB/TrEMBL
SMART Pept_C1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A0P6JBA9 ENTREZGENE, UniProtKB/TrEMBL
  G5BUA5 ENTREZGENE, UniProtKB/TrEMBL