Stab1 (stabilin 1) - Rat Genome Database

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Gene: Stab1 (stabilin 1) Heterocephalus glaber
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Symbol: Stab1
Name: stabilin 1
RGD ID: 18923012
Description: ENCODES a protein that exhibits low-density lipoprotein particle binding (ortholog); low-density lipoprotein particle receptor activity (ortholog); scavenger receptor activity (ortholog); INVOLVED IN cell-cell signaling (ortholog); defense response to bacterium (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); ISOLATED HYPERFERRITINEMIA (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stabilin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,684,103 - 4,710,964 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,683,955 - 4,711,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Stab1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,684,103 - 4,710,964 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248224,683,955 - 4,711,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,495,338 - 52,524,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,495,338 - 52,524,495 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,529,354 - 52,558,511 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,504,396 - 52,533,551 (+)NCBINCBI36Build 36hg18NCBI36
Build 34352,504,439 - 52,533,540NCBI
Celera352,508,595 - 52,537,970 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,591,899 - 52,621,386 (+)NCBIHuRef
CHM1_1352,481,711 - 52,510,878 (+)NCBICHM1_1
T2T-CHM13v2.0352,528,236 - 52,557,403 (+)NCBIT2T-CHM13v2.0
Stab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,860,974 - 30,890,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,860,970 - 30,890,598 (-)EnsemblGRCm39 Ensembl
GRCm381431,139,017 - 31,168,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,139,013 - 31,168,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv371431,952,203 - 31,981,827 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,968,026 - 29,997,581 (-)NCBIMGSCv36mm8
Celera1427,397,577 - 27,427,203 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Stab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,336,871 - 6,367,374 (-)NCBIGRCr8
mRatBN7.2166,330,435 - 6,360,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,330,444 - 6,360,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0167,220,434 - 7,250,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,222,067 - 7,250,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,149,003 - 7,179,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,567,583 - 6,597,972 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,567,700 - 6,598,257 (-)NCBI
Celera168,827,983 - 8,858,792 (+)NCBICelera
Cytogenetic Map16p16NCBI
Stab1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,491,974 - 2,518,063 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554302,491,960 - 2,518,063 (+)NCBIChiLan1.0ChiLan1.0
STAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,490,522 - 52,519,287 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,495,293 - 52,524,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,437,378 - 52,466,143 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,665,387 - 53,694,138 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,665,386 - 53,694,139 (+)Ensemblpanpan1.1panPan2
STAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,249,744 - 37,276,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,249,746 - 37,276,535 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,231,571 - 37,258,465 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,599,193 - 37,626,089 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,599,204 - 37,626,083 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,963,745 - 36,990,590 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,372,373 - 37,399,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,650,617 - 37,677,514 (-)NCBIUU_Cfam_GSD_1.0
Stab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,195,365 - 170,224,683 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,334,032 - 3,363,117 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,333,988 - 3,363,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,636,083 - 34,659,219 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,630,448 - 34,659,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,845,303 - 37,872,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,862,105 - 13,892,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,870,551 - 13,896,970 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041153,007,867 - 153,037,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000005256   ⟹   ENSHGLP00000005189
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,684,103 - 4,710,964 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000005257   ⟹   ENSHGLP00000005190
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248224,684,103 - 4,685,242 (-)Ensembl
RefSeq Acc Id: XM_013065419   ⟹   XP_012920873
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,683,955 - 4,711,159 (-)NCBI
RefSeq Acc Id: XM_013065420   ⟹   XP_012920874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,683,955 - 4,711,161 (-)NCBI
RefSeq Acc Id: XM_021244004   ⟹   XP_021099663
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248224,683,955 - 4,711,159 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012920873 (Get FASTA)   NCBI Sequence Viewer  
  XP_012920874 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005189
RefSeq Acc Id: XP_012920874   ⟸   XM_013065420
- Peptide Label: isoform X2
- UniProtKB: G5BUM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099663   ⟸   XM_021244004
- Peptide Label: isoform X3
- UniProtKB: G5BUM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012920873   ⟸   XM_013065419
- Peptide Label: isoform X1
- UniProtKB: G5BUM4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000005189   ⟸   ENSHGLT00000005256
Ensembl Acc Id: ENSHGLP00000005190   ⟸   ENSHGLT00000005257


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003794 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005256 ENTREZGENE
Gene3D-CATH FAS1 domain UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
  Plasmodium vivax P25 domain UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF_dom UniProtKB/TrEMBL
  FAS1_dom_sf UniProtKB/TrEMBL
  FAS1_domain UniProtKB/TrEMBL
  LE_dom UniProtKB/TrEMBL
  Link_dom UniProtKB/TrEMBL
  PS_Receptors/PDI UniProtKB/TrEMBL
NCBI Gene Stab1 ENTREZGENE
PANTHER STABILIN UniProtKB/TrEMBL
  STABILIN-1 UniProtKB/TrEMBL
Pfam EGF_3 UniProtKB/TrEMBL
  Fasciclin UniProtKB/TrEMBL
  Xlink UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  FAS1 UniProtKB/TrEMBL
  LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  FAS1 UniProtKB/TrEMBL
  LINK UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
  EGF/Laminin UniProtKB/TrEMBL
  FAS1 domain UniProtKB/TrEMBL
UniProt G5BUM4 ENTREZGENE, UniProtKB/TrEMBL