Fbxw9 (F-box and WD repeat domain containing 9) - Rat Genome Database

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Gene: Fbxw9 (F-box and WD repeat domain containing 9) Heterocephalus glaber
Analyze
Symbol: Fbxw9
Name: F-box and WD repeat domain containing 9
RGD ID: 18922687
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box/WD repeat-containing protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901326,428 - 334,035 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901326,657 - 333,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fbxw9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901326,428 - 334,035 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901326,657 - 333,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FBXW9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,688,916 - 12,696,631 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,688,053 - 12,696,631 (-)EnsemblGRCh38hg38GRCh38
GRCh371912,799,730 - 12,807,445 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,660,730 - 12,668,455 (-)NCBINCBI36Build 36hg18NCBI36
Build 341912,660,730 - 12,668,432NCBI
Celera1912,689,444 - 12,697,169 (-)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,372,724 - 12,380,434 (-)NCBIHuRef
CHM1_11912,800,253 - 12,807,962 (-)NCBICHM1_1
T2T-CHM13v2.01912,813,416 - 12,821,121 (-)NCBIT2T-CHM13v2.0
Fbxw9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,786,748 - 85,793,750 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,786,684 - 85,793,753 (+)EnsemblGRCm39 Ensembl
GRCm38885,060,119 - 85,067,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,060,055 - 85,067,124 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,584,018 - 87,591,020 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,950,634 - 87,957,222 (+)NCBIMGSCv36mm8
Celera889,354,869 - 89,361,739 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.54NCBI
Fbxw9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81939,995,408 - 40,002,312 (-)NCBIGRCr8
mRatBN7.21923,090,534 - 23,097,439 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,090,534 - 23,097,439 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1929,913,141 - 29,920,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,567,505 - 30,574,421 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,790,190 - 32,797,106 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01926,173,771 - 26,180,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1926,173,771 - 26,180,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01937,149,394 - 37,156,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,746,820 - 24,753,726 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,751,649 - 24,758,479 (-)NCBI
Celera1922,648,501 - 22,655,405 (-)NCBICelera
Cytogenetic Map19q11NCBI
Fbxw9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,787,002 - 31,794,174 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,788,115 - 31,794,174 (-)NCBIChiLan1.0ChiLan1.0
FBXW9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,617,873 - 17,626,538 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,618,431 - 16,627,104 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,250,790 - 12,259,199 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,996,061 - 13,003,564 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,996,061 - 13,003,564 (-)Ensemblpanpan1.1panPan2
FBXW9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,425,423 - 49,430,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,425,534 - 49,430,667 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,299,037 - 49,304,250 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,943,914 - 49,949,125 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,943,957 - 49,949,132 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,154,949 - 49,160,159 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,581,463 - 49,586,674 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,823,984 - 49,829,194 (+)NCBIUU_Cfam_GSD_1.0
Fbxw9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,531,285 - 208,544,435 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,817,434 - 1,823,401 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,817,379 - 1,823,421 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXW9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,291,172 - 66,297,213 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,290,847 - 66,297,215 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,670,074 - 66,676,406 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXW9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,376,476 - 11,384,600 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,374,898 - 11,384,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,412,344 - 8,420,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000025380   ⟹   ENSHGLP00000025158
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624901326,428 - 334,035 (-)Ensembl
RefSeq Acc Id: XM_004872376   ⟹   XP_004872433
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624901326,657 - 333,198 (-)NCBI
RefSeq Acc Id: XM_021250337   ⟹   XP_021105996
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624901326,657 - 333,200 (-)NCBI
RefSeq Acc Id: XM_021250338   ⟹   XP_021105997
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624901326,657 - 333,203 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004872433 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105996 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105997 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14487 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025158
  ENSHGLP00100024626
GenBank Protein JAN97420 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021105997   ⟸   XM_021250338
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021105996   ⟸   XM_021250337
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004872433   ⟸   XM_004872376
- Peptide Label: isoform X2
- UniProtKB: G5BYX6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025158   ⟸   ENSHGLT00000025380


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017922 Ensembl, ENTREZGENE
  ENSHGLG00100018084 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025380 ENTREZGENE
  ENSHGLT00100024879 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101709753 UniProtKB/TrEMBL
NCBI Gene Fbxw9 ENTREZGENE
PANTHER F-BOX_WD REPEAT-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
  WD40 REPEAT PROTEIN 12, 37 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt G5BYX6 ENTREZGENE, UniProtKB/TrEMBL