Odam (odontogenic, ameloblast associated) - Rat Genome Database

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Gene: Odam (odontogenic, ameloblast associated) Heterocephalus glaber
Analyze
Symbol: Odam
Name: odontogenic, ameloblast associated
RGD ID: 18922550
Description: INVOLVED IN inflammatory response (ortholog); odontogenesis (ortholog); positive regulation of epithelial cell proliferation involved in wound healing (ortholog); FOUND IN cell periphery (ortholog); cytosol (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: odontogenic ameloblast-associated protein; odontogenic, ameloblast asssociated
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248901,623,562 - 1,629,960 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248901,622,846 - 1,631,114 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Odam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248901,623,562 - 1,629,960 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248901,622,846 - 1,631,114 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ODAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38470,195,725 - 70,204,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl470,195,725 - 70,204,576 (+)EnsemblGRCh38hg38GRCh38
GRCh37471,061,442 - 71,070,293 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36471,096,833 - 71,104,882 (+)NCBINCBI36Build 36hg18NCBI36
Celera468,420,214 - 68,428,263 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef466,864,474 - 66,872,522 (+)NCBIHuRef
CHM1_1471,098,652 - 71,106,701 (+)NCBICHM1_1
T2T-CHM13v2.0473,535,038 - 73,543,889 (+)NCBIT2T-CHM13v2.0
Odam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,032,869 - 88,042,668 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,032,888 - 88,042,033 (+)EnsemblGRCm39 Ensembl
GRCm38587,885,010 - 87,894,809 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl587,885,029 - 87,894,174 (+)EnsemblGRCm38mm10GRCm38
MGSCv37588,314,720 - 88,321,770 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36588,962,048 - 88,968,733 (+)NCBIMGSCv36mm8
MGSCv36587,491,886 - 87,498,571 (+)NCBIMGSCv36mm8
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
Odam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,472,530 - 20,496,752 (-)NCBIGRCr8
mRatBN7.21420,193,286 - 20,202,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1420,193,302 - 20,202,517 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1420,123,607 - 20,132,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01421,442,493 - 21,451,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01420,173,243 - 20,182,287 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01421,842,990 - 21,852,216 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1421,842,990 - 21,852,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01421,753,075 - 21,767,321 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41421,714,378 - 21,724,054 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1419,595,876 - 19,605,037 (-)NCBICelera
Cytogenetic Map14p21NCBI
Odam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554472,653,815 - 2,661,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554472,653,815 - 2,661,043 (-)NCBIChiLan1.0ChiLan1.0
ODAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,878,118 - 59,887,218 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1460,074,401 - 60,083,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0454,019,039 - 54,028,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1460,362,655 - 60,370,747 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl460,362,655 - 60,370,747 (-)Ensemblpanpan1.1panPan2
ODAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11359,588,642 - 59,597,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1359,588,647 - 59,597,873 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1359,315,664 - 59,324,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01360,383,221 - 60,392,488 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1360,383,221 - 60,392,488 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11359,997,363 - 60,006,605 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01359,501,814 - 59,511,051 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01360,648,776 - 60,658,033 (+)NCBIUU_Cfam_GSD_1.0
Odam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,986,195 - 15,993,294 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365984,438,258 - 4,445,316 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365984,438,258 - 4,445,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl867,058,472 - 67,066,564 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1867,059,284 - 67,068,117 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28148,456,188 - 148,465,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ODAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1718,676,794 - 18,687,325 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl718,678,422 - 18,685,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660844,236,479 - 4,251,148 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002154   ⟹   ENSHGLP00000002106
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248901,623,562 - 1,629,960 (+)Ensembl
RefSeq Acc Id: XM_004871750   ⟹   XP_004871807
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248901,622,846 - 1,631,114 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004871807 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002106
GenBank Protein JAO02279 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004871807   ⟸   XM_004871750
- UniProtKB: A0A0P6K7C9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002106   ⟸   ENSHGLT00000002154


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001598 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002154 ENTREZGENE
InterPro Odam UniProtKB/TrEMBL
NCBI Gene Odam ENTREZGENE
PANTHER ODONTOGENIC AMELOBLAST-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  PTHR16237 UniProtKB/TrEMBL
Pfam ODAM UniProtKB/TrEMBL
UniProt A0A0P6K7C9 ENTREZGENE, UniProtKB/TrEMBL