Scoc (short coiled-coil protein) - Rat Genome Database

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Gene: Scoc (short coiled-coil protein) Heterocephalus glaber
Analyze
Symbol: Scoc
Name: short coiled-coil protein
RGD ID: 18922508
Description: INVOLVED IN positive regulation of macroautophagy (ortholog); regulation of protein complex stability (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462500615,933 - 23,559 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462500615,912 - 23,559 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Scoc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462500615,933 - 23,559 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462500615,912 - 23,559 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SCOC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,257,308 - 140,385,728 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,257,286 - 140,385,728 (+)EnsemblGRCh38hg38GRCh38
GRCh374141,178,462 - 141,306,882 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,397,890 - 141,523,154 (+)NCBINCBI36Build 36hg18NCBI36
Build 344141,536,044 - 141,661,309NCBI
Celera4138,508,468 - 138,633,708 (+)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4136,908,314 - 137,034,355 (+)NCBIHuRef
CHM1_14141,155,714 - 141,281,064 (+)NCBICHM1_1
T2T-CHM13v2.04143,577,068 - 143,705,503 (+)NCBIT2T-CHM13v2.0
Scoc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,161,121 - 84,185,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,156,713 - 84,185,020 (-)EnsemblGRCm39 Ensembl
GRCm38883,434,492 - 83,458,436 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,430,084 - 83,458,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv37885,958,392 - 85,982,290 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,324,600 - 86,348,454 (-)NCBIMGSCv36mm8
Celera887,727,992 - 87,750,160 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.22NCBI
Scoc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,564,166 - 41,593,932 (+)NCBIGRCr8
mRatBN7.21924,659,651 - 24,689,237 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,659,651 - 24,693,217 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,480,918 - 31,510,507 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,135,324 - 32,164,900 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,351,225 - 34,380,879 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,584,435 - 24,614,167 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,584,455 - 24,614,019 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,562,896 - 35,592,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,351,894 - 26,396,488 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,356,719 - 26,401,313 (+)NCBI
Celera1924,199,454 - 24,230,524 (+)NCBICelera
Cytogenetic Map19q11NCBI
Scoc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,404,326 - 3,435,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,404,372 - 3,435,653 (-)NCBIChiLan1.0ChiLan1.0
SCOC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23138,250,399 - 138,259,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14138,642,803 - 138,651,895 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04132,740,601 - 132,749,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14144,038,551 - 144,055,397 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,015,642 - 144,055,397 (+)Ensemblpanpan1.1panPan2
SCOC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1192,451,678 - 2,494,052 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl192,452,707 - 2,494,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha192,698,291 - 2,740,664 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0192,516,119 - 2,558,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,516,123 - 2,559,323 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,452,996 - 2,495,342 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,814,754 - 2,857,111 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0193,170,509 - 3,212,876 (-)NCBIUU_Cfam_GSD_1.0
Scoc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,966,434 - 50,074,432 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365357,403,767 - 7,412,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCOC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,679,843 - 86,690,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,680,782 - 86,690,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2892,172,592 - 92,182,503 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCOC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,326,672 - 87,336,034 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603766,815,654 - 66,861,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004875403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01108689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000000146   ⟹   ENSHGLP00000000116
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462500615,933 - 23,559 (+)Ensembl
RefSeq Acc Id: XM_004875403   ⟹   XP_004875460
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462500615,912 - 23,559 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004875460 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000116
RefSeq Acc Id: XP_004875460   ⟸   XM_004875403
Ensembl Acc Id: ENSHGLP00000000116   ⟸   ENSHGLT00000000146


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000139 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000146 ENTREZGENE
NCBI Gene Scoc ENTREZGENE