Scoc (short coiled-coil protein) - Rat Genome Database

Name: Scoc
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Scoc (short coiled-coil protein) Mus musculus

Analyze

Symbol:

Scoc

Name:

short coiled-coil protein

RGD ID:

1323538

MGI Page

MGI

Description:

Predicted to be involved in positive regulation of macroautophagy and regulation of protein complex stability. Predicted to colocalize with endosome and trans-Golgi network. Is expressed in ganglia. Orthologous to human SCOC (short coiled-coil protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

0610011C06Rik; 2810002J11Rik; AA415030; SCOCO; short coiled coil protein SCOCO

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCOC (short coiled-coil protein)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Scoc (short coiled-coil protein)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Scoc (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCOC (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCOC (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scoc (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCOC (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SCOC (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scoc (short coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Scoc (short coiled-coil protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	SCOC (short coiled-coil protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	scoca (short coiled-coil protein a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam\|ZFIN)
Danio rerio (zebrafish):	scocb (short coiled-coil protein b)	Alliance	DIOPT (OrthoFinder\|PANTHER\|Roundup\|TreeFam\|ZFIN)
Drosophila melanogaster (fruit fly):	CG5934	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	unc-69	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Related Pseudogenes:

Gm7335

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,161,121 - 84,185,055 (-)	NCBI	GRCm39		mm39
GRCm38	8	83,434,492 - 83,458,436 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	83,430,084 - 83,458,391 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	85,958,392 - 85,982,290 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	86,324,600 - 86,348,454 (-)	NCBI			mm8
Celera	8	87,727,992 - 87,750,160 (-)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (EXP)

aflatoxin B1 (EXP,ISO)

aflatoxin M1 (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bisphenol F (ISO)

calcitriol (ISO)

chloropicrin (ISO)

chromium(6+) (EXP)

clofibrate (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

dioxygen (EXP)

ethanol (EXP)

gold atom (ISO)

gold(0) (ISO)

indole-3-methanol (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methapyrilene (ISO)

oxaliplatin (ISO)

paracetamol (EXP)

pentachlorophenol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

testosterone (ISO)

tetraphene (EXP)

thimerosal (ISO)

topotecan (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of macroautophagy (ISO)

regulation of protein complex stability (ISO)

Cellular Component

cytoplasm (IEA)

endosome (ISO)

Golgi apparatus (ISO)

membrane (IEA)

nucleoplasm (ISO)

trans-Golgi network (IBA,ISO)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12904583	PMID:14610273	PMID:15782199
PMID:16141072	PMID:16141073	PMID:16602821	PMID:18799693	PMID:21267068	PMID:21677750	PMID:21873635	PMID:32325033

Genomics

Comparative Map Data

Scoc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,161,121 - 84,185,055 (-)	NCBI	GRCm39		mm39
GRCm38	8	83,434,492 - 83,458,436 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	83,430,084 - 83,458,391 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	85,958,392 - 85,982,290 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	86,324,600 - 86,348,454 (-)	NCBI			mm8
Celera	8	87,727,992 - 87,750,160 (-)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI

SCOC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	140,257,286 - 140,385,726 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	140,257,308 - 140,385,728 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	141,178,440 - 141,303,710 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	141,397,890 - 141,523,154 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	141,536,044 - 141,661,309	NCBI
Celera	4	138,508,468 - 138,633,708 (+)	NCBI
Cytogenetic Map	4	q31.1	NCBI
HuRef	4	136,908,314 - 137,034,355 (+)	NCBI		HuRef
CHM1_1	4	141,155,714 - 141,281,064 (+)	NCBI		CHM1_1

Scoc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	19	24,584,435 - 24,614,167 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	24,584,455 - 24,614,019 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	35,562,896 - 35,592,598 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	26,351,894 - 26,396,488 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	26,356,719 - 26,401,313 (+)	NCBI
Celera	19	24,199,454 - 24,230,524 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Scoc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	3,404,326 - 3,435,759 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	3,404,372 - 3,435,653 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCOC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	144,038,551 - 144,055,397 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	144,015,642 - 144,055,397 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	132,740,601 - 132,749,658 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SCOC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	19	2,452,707 - 2,494,034 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	19	2,451,678 - 2,494,052 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Scoc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936535	7,403,767 - 7,412,903 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCOC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	86,679,840 - 86,719,164 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	86,680,782 - 86,690,691 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	92,172,592 - 92,182,503 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCOC
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	87,326,672 - 87,336,034 (+)	NCBI

Scoc
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004625006	15,912 - 23,559 (+)	NCBI

Position Markers

RH124374

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	37,712,169 - 37,712,282	UniSTS	GRCm38
GRCm38	8	83,434,525 - 83,434,638	UniSTS	GRCm38
MGSCv37	17	37,849,114 - 37,849,227	UniSTS	GRCm37
MGSCv37	8	85,958,424 - 85,958,537	UniSTS	GRCm37
Celera	17	41,154,029 - 41,154,142	UniSTS
Celera	8	87,728,024 - 87,728,137	UniSTS
Cytogenetic Map	17	B1	UniSTS
Cytogenetic Map	8	C2	UniSTS

px-31d4

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	B2	UniSTS
Cytogenetic Map	X	C1	UniSTS
Cytogenetic Map	8	C2	UniSTS
Cytogenetic Map	3	B	UniSTS
Cytogenetic Map	2	A2	UniSTS
Cytogenetic Map	4	C3	UniSTS
cM Map	5	20.0	UniSTS
cM Map	4	39.4	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	78518613	112518703	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79082178	113082403	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80066775	89014359	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81092664	115092664	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	81619151	115619151	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	915
Count of miRNA genes:	326
Interacting mature miRNAs:	403
Transcripts:	ENSMUST00000081506, ENSMUST00000167525
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001285992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_019708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006531204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006531205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC155304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF115778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK002521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK207171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AU042937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW012698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC017629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC053746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC108407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC147069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY251609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX241959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000081506 ⟹ ENSMUSP00000080221

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,434,495 - 83,458,349 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000167525 ⟹ ENSMUSP00000128210

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,434,516 - 83,442,507 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212031 ⟹ ENSMUSP00000148647

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,435,872 - 83,442,505 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212449 ⟹ ENSMUSP00000148829

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,430,510 - 83,442,450 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212473

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,430,084 - 83,442,501 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212500 ⟹ ENSMUSP00000148753

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,437,554 - 83,439,244 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212849

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,437,753 - 83,458,391 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212871

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,436,248 - 83,442,495 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212905 ⟹ ENSMUSP00000148577

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,435,470 - 83,438,246 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000212947

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	83,435,719 - 83,437,827 (-)	Ensembl

RefSeq Acc Id:

NM_001039137 ⟹ NP_001034226

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,161,121 - 84,185,025 (-)	NCBI
GRCm38	8	83,434,492 - 83,458,396 (-)	NCBI
MGSCv37	8	85,958,392 - 85,982,290 (-)	RGD
Celera	8	87,727,992 - 87,750,165 (-)	NCBI
cM Map	8		ENTREZGENE

Sequence:

show sequence

CGCCAGTCCTCAAGGGTGAACACACGGGGCAGGCGCCAGTCCTCGCTGGCATTGCTCATGAGCA
AGATGGACGGATTGAGCACAGGGGAGGAGGAAGACAGCACGTTCACCAGCATTTCTCTTGAAGA
TGACACAGACCATTCTTTAAAGAGTTGGCGTTCGAGGGCTGAAAGTCTGCTACCCAAGATGATG
AATGCTGACATGGACGCAGTTGATGCTGAAAATCAGGTGGAACTGGAAGAAAAGACTCGACTTA
TTAATCAGGTGTTGGAACTCCAACACACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTTAA
GGAAGAAAATCTGAAGCTAAAGTCGGAAAATCAAGTTCTCGGACAATATATAGAAAACCTCATG
TCTGCTTCTAGTGTTTTTCAAACAACTGATACAAAAAGCAAAAGGAAGTAAAGGGCTCACCTCC
CTCTCTTCTATGGATTGCTGCTTTTTTTCTTCCCCCTTAAGGCTTGGATATGATCCAAAAGTTA
GAGTATCTTTGTTCTTCCCTGAGTATTTATAAAGAGAATGTCACATCTAGGTAACACTAATGCT
GAACAGGAGCATCTCTGAGTTAACGCTATATGTATACGTTAGTCTATGAAAATGTGCACATGTA
GAGACTTTATATTAGAATTACAGATATTTATGAAACTTGAAGATGAATGTTTTGCCAATTTGCT
TATATATATATAGGTTTAGCACTGTCTTTTATCATAAGCCTAACTAGTAAAATATACAAAAAAA
TAACCATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCAC
CGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGTAACTTCAGCAGTTTCTCCTACAAGAGTAA
CCTAAACTAGAATTGTTGACACTTAACCAAAATAAGACACTTTCTTATCTAAGGCTTGCCGTTT
GTGATATTTAGTAATAAGATAGGATTGCTGGTTTCTCTTTAATCAATCGAAAGTAGATTGAAGC
TATAGAAAATGAAGAGTTTTCTTTGAAATGTAAACTGCCACACTGAGAAGCTAAAAACTCCCTA
TTGCATAAAATAGTTCATTTGGTGTTGAAAAGATAGGAATGCTGGTCATATGTGTGTGAGAAAT
TAAAAAACAACAAACAAACAAAAAACTTGAGAAAAGATAGGAATAAGAAGGAAAACTGGATTAA
CAGAAATAACCAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCAC
TTTGGGGACATATATGAAAGTGGACTGAGTCTAATGTAAGTGGATTAAGAGAGACTAGTTAAGA
GTTTGGTCTCAAAGTTTATTTGTACCCAGGAAATGAACTTTTGCAAAATTAATTGAGAGTATAT
TAATATCAGAATCATGAATATAAGAGTTTTGTATATGTGATAATTATTAACCTCGGTATTTTAT
CTCAGTTGTTTTCCCAGAATTTCTGTAAACTCAACTACTTAGTTTGCAGAATTTTAGTCATTCT
TTTAACAAATTTTAAAAATTTAGTTTGTAGCTTCCATTTGATAAGGAGCTGATATCAGAAATAA
TAGTGAAGTCTTATAATAGGAAAGATCCACTAATGCAGCTGGTGGCTCTTAGGCTGGGCTGCTT
TGACTTGTGGAATTATCTAATGTATTAATGTAAGCCTTGATGAGTGACGTTAGCTATATGGATG
TGTAATCCTCACATTGCAGACATTTTGCAACCCTTTTGTGACCTTGTTACAGATATTTAAAATT
GTGTTCAAGTTCTGCTTTGCTGTTTAATAAAAAGCTGTTTCAGAGGTTT

hide sequence

RefSeq Acc Id:

NM_001285992 ⟹ NP_001272921

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,161,121 - 84,169,291 (-)	NCBI
GRCm38	8	83,434,492 - 83,442,662 (-)	NCBI
Celera	8	87,727,992 - 87,750,165 (-)	NCBI

Sequence:

show sequence

GTCAATGCCCTTTTGTTAGGGCAAAGGTGGACCCCGGTGCTCTGCCACAGGCCTGTCGAGGCGT
CCAGCAGCCAGTGCGCAGGCGTGCAATTTCCAGTTAGGATTGGTGGGAGGACGCCTCCTCGCTC
GGCGCACGCTCCGTGGGCGGGAAGGGCGGGGCTGACGCTGTCAGTTGGTCGGAGAGCCGCGCGG
CCTGAGGCTTCCTACCCATCCCGCCTCTTCCCGGCGCTTCAGACGCAAGACCATTCTTTAAAGA
GTTGGCGTTCGAGGGCTGAAAGTCTGCTACCCAAGATGATGAATGCTGACATGGACGTTGATGC
TGAAAATCAGGTGGAACTGGAAGAAAAGACTCGACTTATTAATCAGGTGTTGGAACTCCAACAC
ACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAGTCGG
AAAATCAAGTTCTCGGACAATATATAGAAAACCTCATGTCTGCTTCTAGTGTTTTTCAAACAAC
TGATACAAAAAGCAAAAGGAAGTAAAGGGCTCACCTCCCTCTCTTCTATGGATTGCTGCTTTTT
TTCTTCCCCCTTAAGGCTTGGATATGATCCAAAAGTTAGAGTATCTTTGTTCTTCCCTGAGTAT
TTATAAAGAGAATGTCACATCTAGGTAACACTAATGCTGAACAGGAGCATCTCTGAGTTAACGC
TATATGTATACGTTAGTCTATGAAAATGTGCACATGTAGAGACTTTATATTAGAATTACAGATA
TTTATGAAACTTGAAGATGAATGTTTTGCCAATTTGCTTATATATATATAGGTTTAGCACTGTC
TTTTATCATAAGCCTAACTAGTAAAATATACAAAAAAATAACCATGTTGTGAAAAGTGACCAAA
ACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTC
CCTGACGGTAACTTCAGCAGTTTCTCCTACAAGAGTAACCTAAACTAGAATTGTTGACACTTAA
CCAAAATAAGACACTTTCTTATCTAAGGCTTGCCGTTTGTGATATTTAGTAATAAGATAGGATT
GCTGGTTTCTCTTTAATCAATCGAAAGTAGATTGAAGCTATAGAAAATGAAGAGTTTTCTTTGA
AATGTAAACTGCCACACTGAGAAGCTAAAAACTCCCTATTGCATAAAATAGTTCATTTGGTGTT
GAAAAGATAGGAATGCTGGTCATATGTGTGTGAGAAATTAAAAAACAACAAACAAACAAAAAAC
TTGAGAAAAGATAGGAATAAGAAGGAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGTTTT
CCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCACTTTGGGGACATATATGAAAGTGGACT
GAGTCTAATGTAAGTGGATTAAGAGAGACTAGTTAAGAGTTTGGTCTCAAAGTTTATTTGTACC
CAGGAAATGAACTTTTGCAAAATTAATTGAGAGTATATTAATATCAGAATCATGAATATAAGAG
TTTTGTATATGTGATAATTATTAACCTCGGTATTTTATCTCAGTTGTTTTCCCAGAATTTCTGT
AAACTCAACTACTTAGTTTGCAGAATTTTAGTCATTCTTTTAACAAATTTTAAAAATTTAGTTT
GTAGCTTCCATTTGATAAGGAGCTGATATCAGAAATAATAGTGAAGTCTTATAATAGGAAAGAT
CCACTAATGCAGCTGGTGGCTCTTAGGCTGGGCTGCTTTGACTTGTGGAATTATCTAATGTATT
AATGTAAGCCTTGATGAGTGACGTTAGCTATATGGATGTGTAATCCTCACATTGCAGACATTTT
GCAACCCTTTTGTGACCTTGTTACAGATATTTAAAATTGTGTTCAAGTTCTGCTTTGCTGTTTA
ATAAAAAGCTGTTTCAGAGGTTT

hide sequence

RefSeq Acc Id:

NM_019708 ⟹ NP_062682

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,161,121 - 84,169,291 (-)	NCBI
GRCm38	8	83,434,492 - 83,442,662 (-)	NCBI
MGSCv37	8	85,958,392 - 85,982,290 (-)	RGD
Celera	8	87,727,992 - 87,750,165 (-)	NCBI
cM Map	8		ENTREZGENE

Sequence:

show sequence

GTCAATGCCCTTTTGTTAGGGCAAAGGTGGACCCCGGTGCTCTGCCACAGGCCTGTCGAGGCGT
CCAGCAGCCAGTGCGCAGGCGTGCAATTTCCAGTTAGGATTGGTGGGAGGACGCCTCCTCGCTC
GGCGCACGCTCCGTGGGCGGGAAGGGCGGGGCTGACGCTGTCAGTTGGTCGGAGAGCCGCGCGG
CCTGAGGCTTCCTACCCATCCCGCCTCTTCCCGGCGCTTCAGACGCAAGACCATTCTTTAAAGA
GTTGGCGTTCGAGGGCTGAAAGTCTGCTACCCAAGATGATGAATGCTGACATGGACGCAGTTGA
TGCTGAAAATCAGGTGGAACTGGAAGAAAAGACTCGACTTATTAATCAGGTGTTGGAACTCCAA
CACACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAGT
CGGAAAATCAAGTTCTCGGACAATATATAGAAAACCTCATGTCTGCTTCTAGTGTTTTTCAAAC
AACTGATACAAAAAGCAAAAGGAAGTAAAGGGCTCACCTCCCTCTCTTCTATGGATTGCTGCTT
TTTTTCTTCCCCCTTAAGGCTTGGATATGATCCAAAAGTTAGAGTATCTTTGTTCTTCCCTGAG
TATTTATAAAGAGAATGTCACATCTAGGTAACACTAATGCTGAACAGGAGCATCTCTGAGTTAA
CGCTATATGTATACGTTAGTCTATGAAAATGTGCACATGTAGAGACTTTATATTAGAATTACAG
ATATTTATGAAACTTGAAGATGAATGTTTTGCCAATTTGCTTATATATATATAGGTTTAGCACT
GTCTTTTATCATAAGCCTAACTAGTAAAATATACAAAAAAATAACCATGTTGTGAAAAGTGACC
AAAACCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCC
CTCCCTGACGGTAACTTCAGCAGTTTCTCCTACAAGAGTAACCTAAACTAGAATTGTTGACACT
TAACCAAAATAAGACACTTTCTTATCTAAGGCTTGCCGTTTGTGATATTTAGTAATAAGATAGG
ATTGCTGGTTTCTCTTTAATCAATCGAAAGTAGATTGAAGCTATAGAAAATGAAGAGTTTTCTT
TGAAATGTAAACTGCCACACTGAGAAGCTAAAAACTCCCTATTGCATAAAATAGTTCATTTGGT
GTTGAAAAGATAGGAATGCTGGTCATATGTGTGTGAGAAATTAAAAAACAACAAACAAACAAAA
AACTTGAGAAAAGATAGGAATAAGAAGGAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGT
TTTCCCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCACTTTGGGGACATATATGAAAGTGG
ACTGAGTCTAATGTAAGTGGATTAAGAGAGACTAGTTAAGAGTTTGGTCTCAAAGTTTATTTGT
ACCCAGGAAATGAACTTTTGCAAAATTAATTGAGAGTATATTAATATCAGAATCATGAATATAA
GAGTTTTGTATATGTGATAATTATTAACCTCGGTATTTTATCTCAGTTGTTTTCCCAGAATTTC
TGTAAACTCAACTACTTAGTTTGCAGAATTTTAGTCATTCTTTTAACAAATTTTAAAAATTTAG
TTTGTAGCTTCCATTTGATAAGGAGCTGATATCAGAAATAATAGTGAAGTCTTATAATAGGAAA
GATCCACTAATGCAGCTGGTGGCTCTTAGGCTGGGCTGCTTTGACTTGTGGAATTATCTAATGT
ATTAATGTAAGCCTTGATGAGTGACGTTAGCTATATGGATGTGTAATCCTCACATTGCAGACAT
TTTGCAACCCTTTTGTGACCTTGTTACAGATATTTAAAATTGTGTTCAAGTTCTGCTTTGCTGT
TTAATAAAAAGCTGTTTCAGAGGTTT

hide sequence

RefSeq Acc Id:

XM_006531204 ⟹ XP_006531267

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,161,123 - 84,166,161 (-)	NCBI
GRCm38	8	83,434,494 - 83,439,537 (-)	NCBI

Sequence:

show sequence

AATATCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTGACCTTTTTGACTTATTGACA
GTGTCTTTTGAGGCTGAGATTTTTTAACTTGACCAAATTTCAGAGCCTAAATAAAGAGTGAGGA
TTTTTAATCACTGTGCTAAAGTAAACATTGTCTCGAGAAGAAGTCTTAGAAGATACAGTGTGAA
CATGCAAGGATAATTTAAATTAATCCTGGGCTGGCACTTGCTATATCCCTGAAGTCTTACTGTC
TCTTCTCCCCTTTCTGCATTCTGGATTTAAATTATAAAAGGTTCTCACTAACAAGCTGGATACA
CACAGGCATTGAGATTCCTGTGATTTTTCAAAGAAAAGTCTTTTAAAGATCTCAGAGAATAATG
TTCCTTTCAGAGCCAGGGCAGCTGACCATTCTTTAAAGAGTTGGCGTTCGAGGGCTGAAAGTCT
GCTACCCAAGATGATGAATGCTGACATGGACGCAGTTGATGCTGAAAATCAGGTGGAACTGGAA
GAAAAGACTCGACTTATTAATCAGGTGTTGGAACTCCAACACACACTTGAAGATCTTTCTGCAA
GAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAGTCGGAAAATCAAGTTCTCGGACAATA
TATAGAAAACCTCATGTCTGCTTCTAGTGTTTTTCAAACAACTGATACAAAAAGCAAAAGGAAG
TAAAGGGCTCACCTCCCTCTCTTCTATGGATTGCTGCTTTTTTTCTTCCCCCTTAAGGCTTGGA
TATGATCCAAAAGTTAGAGTATCTTTGTTCTTCCCTGAGTATTTATAAAGAGAATGTCACATCT
AGGTAACACTAATGCTGAACAGGAGCATCTCTGAGTTAACGCTATATGTATACGTTAGTCTATG
AAAATGTGCACATGTAGAGACTTTATATTAGAATTACAGATATTTATGAAACTTGAAGATGAAT
GTTTTGCCAATTTGCTTATATATATATAGGTTTAGCACTGTCTTTTATCATAAGCCTAACTAGT
AAAATATACAAAAAAATAACCATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCT
TCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGTAACTTCAGCAGTT
TCTCCTACAAGAGTAACCTAAACTAGAATTGTTGACACTTAACCAAAATAAGACACTTTCTTAT
CTAAGGCTTGCCGTTTGTGATATTTAGTAATAAGATAGGATTGCTGGTTTCTCTTTAATCAATC
GAAAGTAGATTGAAGCTATAGAAAATGAAGAGTTTTCTTTGAAATGTAAACTGCCACACTGAGA
AGCTAAAAACTCCCTATTGCATAAAATAGTTCATTTGGTGTTGAAAAGATAGGAATGCTGGTCA
TATGTGTGTGAGAAATTAAAAAACAACAAACAAACAAAAAACTTGAGAAAAGATAGGAATAAGA
AGGAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTC
TGGCCCACAGCTGCACTTTGGGGACATATATGAAAGTGGACTGAGTCTAATGTAAGTGGATTAA
GAGAGACTAGTTAAGAGTTTGGTCTCAAAGTTTATTTGTACCCAGGAAATGAACTTTTGCAAAA
TTAATTGAGAGTATATTAATATCAGAATCATGAATATAAGAGTTTTGTATATGTGATAATTATT
AACCTCGGTATTTTATCTCAGTTGTTTTCCCAGAATTTCTGTAAACTCAACTACTTAGTTTGCA
GAATTTTAGTCATTCTTTTAACAAATTTTAAAAATTTAGTTTGTAGCTTCCATTTGATAAGGAG
CTGATATCAGAAATAATAGTGAAGTCTTATAATAGGAAAGATCCACTAATGCAGCTGGTGGCTC
TTAGGCTGGGCTGCTTTGACTTGTGGAATTATCTAATGTATTAATGTAAGCCTTGATGAGTGAC
GTTAGCTATATGGATGTGTAATCCTCACATTGCAGACATTTTGCAACCCTTTTGTGACCTTGTT
ACAGATATTTAAAATTGTGTTCAAGTTCTGCTTTGCTGTTTAATAAAAAGCTGTTTCAGAGGT

hide sequence

RefSeq Acc Id:

XM_006531205 ⟹ XP_006531268

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,161,123 - 84,166,167 (-)	NCBI
GRCm38	8	83,434,494 - 83,439,538 (-)	NCBI

Sequence:

show sequence

CAATATCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTGACCTTTTTGACTTATTGAC
AGTGTCTTTTGAGGCTGAGATTTTTTAACTTGACCAAATTTCAGAGCCTAAATAAAGAGTGAGG
ATTTTTAATCACTGTGCTAAAGTAAACATTGTCTCGAGAAGAAGTCTTAGAAGATACAGTGTGA
ACATGCAAGGATAATTTAAATTAATCCTGGGCTGGCACTTGCTATATCCCTGAAGTCTTACTGT
CTCTTCTCCCCTTTCTGCATTCTGGATTTAAATTATAAAAGGTTCTCACTAACAAGCTGGATAC
ACACAGGCATTGAGATTCCTGTGATTTTTCAAAGAAAAGTCTTTTAAAGATCTCAGAGAATAAT
GTTCCTTTCAGAGCCAGGGCAGCTGACCATTCTTTAAAGAGTTGGCGTTCGAGGGCTGAAAGTC
TGCTACCCAAGATGATGAATGCTGACATGGACGTTGATGCTGAAAATCAGGTGGAACTGGAAGA
AAAGACTCGACTTATTAATCAGGTGTTGGAACTCCAACACACACTTGAAGATCTTTCTGCAAGA
GTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAGTCGGAAAATCAAGTTCTCGGACAATATA
TAGAAAACCTCATGTCTGCTTCTAGTGTTTTTCAAACAACTGATACAAAAAGCAAAAGGAAGTA
AAGGGCTCACCTCCCTCTCTTCTATGGATTGCTGCTTTTTTTCTTCCCCCTTAAGGCTTGGATA
TGATCCAAAAGTTAGAGTATCTTTGTTCTTCCCTGAGTATTTATAAAGAGAATGTCACATCTAG
GTAACACTAATGCTGAACAGGAGCATCTCTGAGTTAACGCTATATGTATACGTTAGTCTATGAA
AATGTGCACATGTAGAGACTTTATATTAGAATTACAGATATTTATGAAACTTGAAGATGAATGT
TTTGCCAATTTGCTTATATATATATAGGTTTAGCACTGTCTTTTATCATAAGCCTAACTAGTAA
AATATACAAAAAAATAACCATGTTGTGAAAAGTGACCAAAACCATGTACTGAATGCACAGCTTC
TGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCCCTGACGGTAACTTCAGCAGTTTC
TCCTACAAGAGTAACCTAAACTAGAATTGTTGACACTTAACCAAAATAAGACACTTTCTTATCT
AAGGCTTGCCGTTTGTGATATTTAGTAATAAGATAGGATTGCTGGTTTCTCTTTAATCAATCGA
AAGTAGATTGAAGCTATAGAAAATGAAGAGTTTTCTTTGAAATGTAAACTGCCACACTGAGAAG
CTAAAAACTCCCTATTGCATAAAATAGTTCATTTGGTGTTGAAAAGATAGGAATGCTGGTCATA
TGTGTGTGAGAAATTAAAAAACAACAAACAAACAAAAAACTTGAGAAAAGATAGGAATAAGAAG
GAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGTTTTCCCTCTAAATGTGTATTACCTCTG
GCCCACAGCTGCACTTTGGGGACATATATGAAAGTGGACTGAGTCTAATGTAAGTGGATTAAGA
GAGACTAGTTAAGAGTTTGGTCTCAAAGTTTATTTGTACCCAGGAAATGAACTTTTGCAAAATT
AATTGAGAGTATATTAATATCAGAATCATGAATATAAGAGTTTTGTATATGTGATAATTATTAA
CCTCGGTATTTTATCTCAGTTGTTTTCCCAGAATTTCTGTAAACTCAACTACTTAGTTTGCAGA
ATTTTAGTCATTCTTTTAACAAATTTTAAAAATTTAGTTTGTAGCTTCCATTTGATAAGGAGCT
GATATCAGAAATAATAGTGAAGTCTTATAATAGGAAAGATCCACTAATGCAGCTGGTGGCTCTT
AGGCTGGGCTGCTTTGACTTGTGGAATTATCTAATGTATTAATGTAAGCCTTGATGAGTGACGT
TAGCTATATGGATGTGTAATCCTCACATTGCAGACATTTTGCAACCCTTTTGTGACCTTGTTAC
AGATATTTAAAATTGTGTTCAAGTTCTGCTTTGCTGTTTAATAAAAAGCTGTTTCAGAGGT

hide sequence

RefSeq Acc Id:

XM_011248448 ⟹ XP_011246750

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	84,161,123 - 84,185,055 (-)	NCBI
GRCm38	8	83,434,494 - 83,458,436 (-)	NCBI

Sequence:

show sequence

AGGCAGCTGCCACTCCTCAAGGGCGAGCACACGGGGCAGGCGCCAGTCCTCAAGGGTGAACACA
CGGGGCAGGCGCCAGTCCTCGCTGGCATTGCTCATGAGCAAGATGGACGGATTGAGCACAGGGG
AGGAGGAAGACAGCACGTTCACCAGCATTTCTCTTGAAGATGACACAGACCATTCTTTAAAGAG
TTGGCGTTCGAGGGCTGAAAGTCTGCTACCCAAGATGATGAATGCTGACATGGACGTTGATGCT
GAAAATCAGGTGGAACTGGAAGAAAAGACTCGACTTATTAATCAGGTGTTGGAACTCCAACACA
CACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAATCTGAAGCTAAAGTCGGA
AAATCAAGTTCTCGGACAATATATAGAAAACCTCATGTCTGCTTCTAGTGTTTTTCAAACAACT
GATACAAAAAGCAAAAGGAAGTAAAGGGCTCACCTCCCTCTCTTCTATGGATTGCTGCTTTTTT
TCTTCCCCCTTAAGGCTTGGATATGATCCAAAAGTTAGAGTATCTTTGTTCTTCCCTGAGTATT
TATAAAGAGAATGTCACATCTAGGTAACACTAATGCTGAACAGGAGCATCTCTGAGTTAACGCT
ATATGTATACGTTAGTCTATGAAAATGTGCACATGTAGAGACTTTATATTAGAATTACAGATAT
TTATGAAACTTGAAGATGAATGTTTTGCCAATTTGCTTATATATATATAGGTTTAGCACTGTCT
TTTATCATAAGCCTAACTAGTAAAATATACAAAAAAATAACCATGTTGTGAAAAGTGACCAAAA
CCATGTACTGAATGCACAGCTTCTGTACCTTGTGCACCGTCTTGTGCCTCTCCCATCTCCCTCC
CTGACGGTAACTTCAGCAGTTTCTCCTACAAGAGTAACCTAAACTAGAATTGTTGACACTTAAC
CAAAATAAGACACTTTCTTATCTAAGGCTTGCCGTTTGTGATATTTAGTAATAAGATAGGATTG
CTGGTTTCTCTTTAATCAATCGAAAGTAGATTGAAGCTATAGAAAATGAAGAGTTTTCTTTGAA
ATGTAAACTGCCACACTGAGAAGCTAAAAACTCCCTATTGCATAAAATAGTTCATTTGGTGTTG
AAAAGATAGGAATGCTGGTCATATGTGTGTGAGAAATTAAAAAACAACAAACAAACAAAAAACT
TGAGAAAAGATAGGAATAAGAAGGAAAACTGGATTAACAGAAATAACCAGCTCGCAGTGTTTTC
CCTCTAAATGTGTATTACCTCTGGCCCACAGCTGCACTTTGGGGACATATATGAAAGTGGACTG
AGTCTAATGTAAGTGGATTAAGAGAGACTAGTTAAGAGTTTGGTCTCAAAGTTTATTTGTACCC
AGGAAATGAACTTTTGCAAAATTAATTGAGAGTATATTAATATCAGAATCATGAATATAAGAGT
TTTGTATATGTGATAATTATTAACCTCGGTATTTTATCTCAGTTGTTTTCCCAGAATTTCTGTA
AACTCAACTACTTAGTTTGCAGAATTTTAGTCATTCTTTTAACAAATTTTAAAAATTTAGTTTG
TAGCTTCCATTTGATAAGGAGCTGATATCAGAAATAATAGTGAAGTCTTATAATAGGAAAGATC
CACTAATGCAGCTGGTGGCTCTTAGGCTGGGCTGCTTTGACTTGTGGAATTATCTAATGTATTA
ATGTAAGCCTTGATGAGTGACGTTAGCTATATGGATGTGTAATCCTCACATTGCAGACATTTTG
CAACCCTTTTGTGACCTTGTTACAGATATTTAAAATTGTGTTCAAGTTCTGCTTTGCTGTTTAA
TAAAAAGCTGTTTCAGAGGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034226	(Get FASTA)	NCBI Sequence Viewer
	NP_001272921	(Get FASTA)	NCBI Sequence Viewer
	NP_062682	(Get FASTA)	NCBI Sequence Viewer
	XP_006531267	(Get FASTA)	NCBI Sequence Viewer
	XP_006531268	(Get FASTA)	NCBI Sequence Viewer
	XP_011246750	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD26690	(Get FASTA)	NCBI Sequence Viewer
	AAH17629	(Get FASTA)	NCBI Sequence Viewer
	AAH85265	(Get FASTA)	NCBI Sequence Viewer
	AAH92071	(Get FASTA)	NCBI Sequence Viewer
	AAI08408	(Get FASTA)	NCBI Sequence Viewer
	AAI47070	(Get FASTA)	NCBI Sequence Viewer
	BAB22159	(Get FASTA)	NCBI Sequence Viewer
	BAB22561	(Get FASTA)	NCBI Sequence Viewer
	BAC36171	(Get FASTA)	NCBI Sequence Viewer
	BAE39567	(Get FASTA)	NCBI Sequence Viewer
	EDL10904	(Get FASTA)	NCBI Sequence Viewer
	Q78YZ6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001034226 ⟸ NM_001039137
- Peptide Label:	isoform a
- UniProtKB:	Q78YZ6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSKMDGLSTGEEEDSTFTSISLEDDTDHSLKSWRSRAESLLPKMMNADMDAVDAENQVELEEKT RLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK hide sequence

RefSeq Acc Id:	NP_062682 ⟸ NM_019708
- Peptide Label:	isoform b
- UniProtKB:	Q78YZ6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIEN LMSASSVFQTTDTKSKRK hide sequence

RefSeq Acc Id:	NP_001272921 ⟸ NM_001285992
- Peptide Label:	isoform c
- UniProtKB:	Q78YZ6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL MSASSVFQTTDTKSKRK hide sequence

RefSeq Acc Id:	XP_006531268 ⟸ XM_006531205
- Peptide Label:	isoform X3
- UniProtKB:	Q78YZ6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL MSASSVFQTTDTKSKRK hide sequence

RefSeq Acc Id:	XP_006531267 ⟸ XM_006531204
- Peptide Label:	isoform X2
- UniProtKB:	Q78YZ6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIEN LMSASSVFQTTDTKSKRK hide sequence

RefSeq Acc Id:	XP_011246750 ⟸ XM_011248448
- Peptide Label:	isoform X1
- Sequence:	show sequence MSKMDGLSTGEEEDSTFTSISLEDDTDHSLKSWRSRAESLLPKMMNADMDVDAENQVELEEKTR LINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK hide sequence

RefSeq Acc Id:

ENSMUSP00000080221 ⟸ ENSMUST00000081506

RefSeq Acc Id:

ENSMUSP00000148577 ⟸ ENSMUST00000212905

RefSeq Acc Id:

ENSMUSP00000128210 ⟸ ENSMUST00000167525

RefSeq Acc Id:

ENSMUSP00000148753 ⟸ ENSMUST00000212500

RefSeq Acc Id:

ENSMUSP00000148647 ⟸ ENSMUST00000212031

RefSeq Acc Id:

ENSMUSP00000148829 ⟸ ENSMUST00000212449

Promoters

RGD ID:

8667599

Promoter ID:

EPDNEW_M11831

Type:

initiation region

Name:

Scoc_1

Description:

Mus musculus short coiled-coil protein , transcript variant 2,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M11832

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	83,442,495 - 83,442,555	EPDNEW

RGD ID:

8667601

Promoter ID:

EPDNEW_M11832

Type:

initiation region

Name:

Scoc_2

Description:

Mus musculus short coiled-coil protein , transcript variant 2,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M11831

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	83,458,359 - 83,458,419	EPDNEW

RGD ID:

6843697

Promoter ID:

MM_KWN:55001

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_019708, UC009MKG.1, UC009MKI.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	85,966,254 - 85,966,754 (-)	MPROMDB

RGD ID:

6843695

Promoter ID:

MM_KWN:55002

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney

Transcripts:

NM_001039137

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	85,982,126 - 85,982,626 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1927654	AgrOrtholog
Ensembl Genes	ENSMUSG00000063253	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000080221	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000128210	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000148577	UniProtKB/Swiss-Prot
	ENSMUSP00000148647	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000148753	UniProtKB/TrEMBL
	ENSMUSP00000148829	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000081506	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000167525	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000212031	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000212449	UniProtKB/TrEMBL
	ENSMUST00000212500	UniProtKB/TrEMBL
	ENSMUST00000212905	UniProtKB/Swiss-Prot
InterPro	SCOC	UniProtKB/Swiss-Prot
KEGG Report	mmu:56367	UniProtKB/Swiss-Prot
MGD	MGI:1927654	ENTREZGENE
NCBI Gene	56367	ENTREZGENE
PANTHER	PTHR21614	UniProtKB/Swiss-Prot
Pfam	DUF2205	UniProtKB/Swiss-Prot
PhenoGen	Scoc	PhenoGen
UniGene	Mm.246911	ENTREZGENE
UniProt	A0A1D5RMF2_MOUSE	UniProtKB/TrEMBL
	A0A1D5RML7_MOUSE	UniProtKB/TrEMBL
	Q78YZ6	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	B2RV68	UniProtKB/Swiss-Prot
	Q32NY7	UniProtKB/Swiss-Prot
	Q3TJC8	UniProtKB/Swiss-Prot
	Q58E48	UniProtKB/Swiss-Prot
	Q5U450	UniProtKB/Swiss-Prot
	Q9WU55	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)