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Gene: Zmym1 (zinc finger MYM-type containing 1) Heterocephalus glaber

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Symbol:

Zmym1

Name:

zinc finger MYM-type containing 1

RGD ID:

18921933

Description:

ENCODES a protein that exhibits protein dimerization activity (inferred); zinc ion binding (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger MYM-type protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	18,149,107 - 18,164,452 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	18,136,239 - 18,165,728 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zmym1	Naked Mole-Rat	Charcot-Marie-Tooth disease dominant intermediate C		ISO	ZMYM1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate C	ClinVar	PMID:28492532

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zmym1	Naked Mole-Rat	protein dimerization activity	enables	IEA	InterPro:IPR008906	150520179		InterPro	GO_REF:0000002
Zmym1	Naked Mole-Rat	zinc ion binding	enables	IEA	InterPro:IPR010507	150520179		InterPro	GO_REF:0000002

PMID:22301074

Zmym1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	18,149,107 - 18,164,452 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	18,136,239 - 18,165,728 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

ZMYM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	35,059,786 - 35,118,818 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	35,032,172 - 35,118,818 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	35,525,387 - 35,581,460 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	35,317,559 - 35,354,042 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	35,214,084 - 35,250,547	NCBI
Celera	1	33,818,420 - 33,854,843 (+)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	33,662,356 - 33,698,885 (+)	NCBI		HuRef
CHM1_1	1	35,660,702 - 35,697,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	34,922,450 - 34,978,527 (+)	NCBI		T2T-CHM13v2.0

Zmym1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	126,940,887 - 126,954,968 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	126,940,887 - 126,954,945 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	127,047,094 - 127,061,176 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	127,047,094 - 127,061,152 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	126,724,338 - 126,738,376 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	126,549,398 - 126,563,436 (-)	NCBI		MGSCv36	mm8
Celera	4	125,381,256 - 125,395,289 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	61.22	NCBI

Zmym1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	144,649,238 - 144,666,334 (-)	NCBI		GRCr8
mRatBN7.2	5	139,364,788 - 139,381,883 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	139,364,789 - 139,381,873 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	142,060,921 - 142,078,000 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	143,830,897 - 143,847,976 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	143,831,700 - 143,848,772 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	145,106,518 - 145,123,869 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	145,105,997 - 145,123,861 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	148,876,920 - 148,894,262 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	146,487,291 - 146,504,387 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	146,497,388 - 146,514,498 (-)	NCBI
Celera	5	137,859,438 - 137,876,532 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Zmym1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	13,196,007 - 13,230,202 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	13,196,280 - 13,228,283 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZMYM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	191,727,191 - 191,766,862 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	190,848,371 - 190,888,053 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	34,345,439 - 34,383,605 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	35,527,411 - 35,563,423 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	35,536,527 - 35,563,423 (+)	Ensembl	panpan1.1		panPan2

ZMYM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	6,918,292 - 6,946,293 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	6,918,589 - 6,937,638 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	7,148,336 - 7,186,115 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	7,055,849 - 7,091,889 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	7,064,660 - 7,091,828 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	6,928,300 - 6,955,734 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	6,975,348 - 7,002,617 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	6,980,725 - 7,016,512 (-)	NCBI		UU_Cfam_GSD_1.0

Zmym1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	51,862,717 - 51,886,601 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	17,687,458 - 17,713,047 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	17,687,529 - 17,712,953 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZMYM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	91,312,216 - 91,349,312 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	91,312,154 - 91,346,276 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZMYM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	97,756,181 - 97,795,408 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	97,756,784 - 97,795,146 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	18,929,387 - 18,964,694 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021263300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01045004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000014510 ⟹ ENSHGLP00000014366

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624764	18,149,107 - 18,164,452 (+)	Ensembl

Ensembl Acc Id:

ENSHGLT00000014511 ⟹ ENSHGLP00000014367

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624764	18,149,107 - 18,164,452 (+)	Ensembl

RefSeq Acc Id:

XM_021263300 ⟹ XP_021118959

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624764	18,136,239 - 18,165,728 (+)	NCBI


Protein RefSeqs	XP_021118959	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021118959 ⟸ XM_021263300
- UniProtKB:	A0AAX6TBJ5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSHGLP00000014366 ⟸ ENSHGLT00000014510

Ensembl Acc Id:

ENSHGLP00000014367 ⟸ ENSHGLT00000014511

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000010282	Ensembl
InterPro	DUF4371	UniProtKB/TrEMBL
	HATC_C_dom	UniProtKB/TrEMBL
	RNaseH-like_sf	UniProtKB/TrEMBL
	TRASH_dom	UniProtKB/TrEMBL
	Znf_MYM	UniProtKB/TrEMBL
	ZnF_MYMT-QRICH1	UniProtKB/TrEMBL
NCBI Gene	Zmym1	ENTREZGENE
PANTHER	ZINC FINGER MYM-TYPE PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER MYM-TYPE PROTEIN 1	UniProtKB/TrEMBL
Pfam	Dimer_Tnp_hAT	UniProtKB/TrEMBL
	DUF4371	UniProtKB/TrEMBL
	zf-FCS	UniProtKB/TrEMBL
SMART	TRASH	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	Ribonuclease H-like	UniProtKB/TrEMBL
UniProt	A0AAX6TBJ5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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