Golt1a (golgi transport 1A) - Rat Genome Database

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Gene: Golt1a (golgi transport 1A) Heterocephalus glaber
Analyze
Symbol: Golt1a
Name: golgi transport 1A
RGD ID: 18921864
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); retrograde transport, endosome to Golgi (inferred); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN Golgi cis cisterna (ortholog); nuclear envelope (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vesicle transport protein GOT1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,795,884 - 6,798,898 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,787,933 - 6,799,206 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Golt1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,795,884 - 6,798,898 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,787,933 - 6,799,206 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GOLT1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,198,163 - 204,213,988 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,198,163 - 204,213,988 (-)EnsemblGRCh38hg38GRCh38
GRCh371204,167,291 - 204,183,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,433,911 - 202,449,843 (-)NCBINCBI36Build 36hg18NCBI36
Build 341200,898,944 - 200,914,877NCBI
Celera1177,302,746 - 177,318,675 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,332,277 - 175,348,173 (-)NCBIHuRef
CHM1_11205,591,205 - 205,607,128 (-)NCBICHM1_1
T2T-CHM13v2.01203,462,758 - 203,478,572 (-)NCBIT2T-CHM13v2.0
Golt1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,237,561 - 133,250,764 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,237,565 - 133,257,639 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1133,237,538 - 133,250,764 (+)EnsemblGRCm39 Ensembl
GRCm381133,309,823 - 133,323,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,309,827 - 133,329,901 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,309,800 - 133,323,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371135,206,400 - 135,219,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,137,373 - 135,157,173 (+)NCBIMGSCv36mm8
Celera1135,922,392 - 135,935,498 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.91NCBI
Golt1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,312,412 - 47,325,176 (+)NCBIGRCr8
mRatBN7.21344,760,356 - 44,773,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,760,380 - 44,773,122 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1347,370,502 - 47,383,165 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,658,606 - 48,671,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,916,400 - 45,929,067 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,532,116 - 50,550,029 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,537,133 - 50,550,015 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,589,979 - 55,602,878 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,224,376 - 46,237,118 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1345,093,262 - 45,106,001 (+)NCBICelera
Cytogenetic Map13q13NCBI
Golt1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540640,050,069 - 40,053,369 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540640,049,060 - 40,061,902 (-)NCBIChiLan1.0ChiLan1.0
GOLT1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2145,162,945 - 45,178,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1145,128,079 - 45,143,983 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01179,800,580 - 179,816,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,088,931 - 184,104,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,080,570 - 184,104,815 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1184,088,931 - 184,104,815 (-)Ensemblpanpan1.1panPan2
GOLT1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138774,454 - 790,899 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38774,454 - 789,655 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38869,945 - 885,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.038769,790 - 785,486 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl38769,790 - 785,385 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.138766,329 - 781,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,157,720 - 1,173,350 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,357,933 - 1,373,532 (-)NCBIUU_Cfam_GSD_1.0
Golt1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,334,927 - 71,345,815 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936567577,205 - 580,142 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936567569,629 - 580,142 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KISS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,834,820 - 64,853,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,842,277 - 64,853,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,175,507 - 71,186,884 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLT1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,134,810 - 25,151,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2525,135,616 - 25,151,395 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,896,171 - 25,912,034 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008013   ⟹   ENSHGLP00000007925
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248076,795,884 - 6,798,898 (+)Ensembl
RefSeq Acc Id: XM_004862160   ⟹   XP_004862217
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,787,934 - 6,799,206 (+)NCBI
RefSeq Acc Id: XM_021242401   ⟹   XP_021098060
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,787,933 - 6,798,019 (+)NCBI
RefSeq Acc Id: XM_021242402   ⟹   XP_021098061
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,787,933 - 6,799,206 (+)NCBI
RefSeq Acc Id: XM_021242403   ⟹   XP_021098062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,787,933 - 6,798,277 (+)NCBI
RefSeq Acc Id: XM_021242404   ⟹   XP_021098063
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248076,787,933 - 6,798,292 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862217 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098060 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098061 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098062 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098063 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007925
GenBank Protein JAO00217 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021098061   ⟸   XM_021242402
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RN82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098063   ⟸   XM_021242404
- Peptide Label: isoform X5
- UniProtKB: A0AAX6RP08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098062   ⟸   XM_021242403
- Peptide Label: isoform X4
- UniProtKB: A0AAX6RQP2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098060   ⟸   XM_021242401
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RPQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862217   ⟸   XM_004862160
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J7I4 (UniProtKB/TrEMBL),   G5BMM1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007925   ⟸   ENSHGLT00000008013


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005741 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008013 ENTREZGENE
InterPro Got1 UniProtKB/TrEMBL
  Vesicle_transpt_Got1/SFT2 UniProtKB/TrEMBL
KEGG Report hgl:101723904 UniProtKB/TrEMBL
NCBI Gene Golt1a ENTREZGENE
PANTHER PTHR21493 UniProtKB/TrEMBL
  VESICLE TRANSPORT PROTEIN GOT1A UniProtKB/TrEMBL
Pfam Got1 UniProtKB/TrEMBL
UniProt A0A0P6J7I4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RN82 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RP08 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RPQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQP2 ENTREZGENE, UniProtKB/TrEMBL
  G5BMM1 ENTREZGENE, UniProtKB/TrEMBL