Ubqln2 (ubiquilin 2) - Rat Genome Database

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Gene: Ubqln2 (ubiquilin 2) Heterocephalus glaber
Analyze
Symbol: Ubqln2
Name: ubiquilin 2
RGD ID: 18921042
Description: ENCODES a protein that exhibits identical protein binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN negative regulation of clathrin-dependent endocytosis (ortholog); negative regulation of G protein-coupled receptor internalization (ortholog); positive regulation of ERAD pathway (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); amyotrophic lateral sclerosis type 15 (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ubiquilin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249101,548,249 - 1,550,126 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249101,547,942 - 1,551,323 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ubqln2Naked Mole-Ratamyotrophic lateral sclerosis  ISOUBQLN2 (Homo sapiens)8554872ClinVar Annotator: match by term: Lou Gehrig diseaseClinVarPMID:21857683 more ...
Ubqln2Naked Mole-Ratamyotrophic lateral sclerosis type 1  ISOUBQLN2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:19377476 more ...
Ubqln2Naked Mole-Ratamyotrophic lateral sclerosis type 15  ISOUBQLN2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:19377476 more ...
Ubqln2Naked Mole-Ratautistic disorder  ISOUBQLN2 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism more ...ClinVarPMID:21681106 and PMID:30208311
Ubqln2Naked Mole-Ratautosomal hemophilia A  ISOUBQLN2 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Ubqln2Naked Mole-Ratfactor VIII deficiency  ISOUBQLN2 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Ubqln2Naked Mole-Ratsyndromic X-linked intellectual disability Lubs type  ISOUBQLN2 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
Ubqln2Naked Mole-Ratvascular dementia  ISOUBQLN2 (Homo sapiens)8554872ClinVar Annotator: match by term: Vascular dementiaClinVarPMID:35307828
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ubqln2Naked Mole-Ratamyotrophic lateral sclerosis type 15  ISOUBQLN2 (Homo sapiens)7240710 OMIM 


Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ubqln2Naked Mole-Ratcytoplasm located_inISOUBQLN2 (Homo sapiens)9068941 PMID:18199683UniProtPMID:18199683
Ubqln2Naked Mole-Ratcytosol located_inIEAPANTHER:PTN000073489150520179 TreeGrafterGO_REF:0000118
Ubqln2Naked Mole-Ratplasma membrane located_inISOUBQLN2 (Homo sapiens)9068941 HPAGO_REF:0000052

Molecular Function
1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ubqln2Naked Mole-Ratidentical protein binding enablesISOUniProtKB:Q9UHD99068941 PMID:32296183IntActPMID:32296183
Ubqln2Naked Mole-Ratmolecular condensate scaffold activity enablesISOUBQLN2 (Homo sapiens)9068941 PMID:29526694DisProtPMID:29526694
Ubqln2Naked Mole-Ratpolyubiquitin modification-dependent protein binding enablesIEAPANTHER:PTN000073489150520179 TreeGrafterGO_REF:0000118
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q9BVV7 more ...9068941 PMID:32296183IntActPMID:32296183
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q6DFW09068941 PMID:24549040UniProtPMID:24549040
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:P487239068941 PMID:35914814IntActPMID:35914814
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:P0DTC6 and UniProtKB:P0DTD39068941 PMID:36217029IntActPMID:36217029
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:P547259068941 PMID:17098253IntActPMID:17098253
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:P09651 more ...9068941 PMID:25616961IntActPMID:25616961
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q9Y3C59068941 PMID:15231748IntActPMID:15231748
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:P027459068941 PMID:21988832IntActPMID:21988832
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q161869068941 PMID:18497817 and PMID:24811749IntActPMID:18497817 and PMID:24811749
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:P07686 more ...9068941 PMID:32814053IntActPMID:32814053
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:O48726 and UniProtKB:Q161869068941 PMID:20059542IntActPMID:20059542
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:O95208 more ...9068941 PMID:18199683UniProtPMID:18199683
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:A0A1U9X8X8 more ...9068941 PMID:32296183IntActPMID:32296183
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q96CS39068941 PMID:24215460UniProtPMID:24215460
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q131489068941 PMID:23541532UniProtPMID:23541532
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:A0A0G2K916 more ...9068941PMID:27191843UniProtPMID:27191843 and REF_RGD_ID:11344934
Ubqln2Naked Mole-Ratprotein binding enablesISOUniProtKB:Q150119068941 PMID:18307982UniProtPMID:18307982
1 to 20 of 22 rows

PMID:21993625   PMID:30032202  



Ubqln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249101,548,249 - 1,550,126 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249101,547,942 - 1,551,323 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UBQLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X56,563,627 - 56,567,868 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX56,563,627 - 56,567,868 (+)EnsemblGRCh38hg38GRCh38
GRCh37X56,590,060 - 56,594,301 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X56,606,797 - 56,610,102 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X56,473,092 - 56,476,398NCBI
CeleraX60,422,310 - 60,425,727 (+)NCBICelera
Cytogenetic MapXp11.21NCBI
HuRefX53,642,196 - 53,645,647 (+)NCBIHuRef
CHM1_1X56,580,226 - 56,583,643 (+)NCBICHM1_1
T2T-CHM13v2.0X55,856,941 - 55,861,182 (+)NCBIT2T-CHM13v2.0
Ubqln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X152,281,228 - 152,284,558 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX152,281,223 - 152,284,566 (+)EnsemblGRCm39 Ensembl
GRCm38X153,498,232 - 153,501,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX153,498,227 - 153,501,570 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X149,932,775 - 149,936,105 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X148,838,948 - 148,842,278 (+)NCBIMGSCv36mm8
CeleraX135,753,727 - 135,757,059 (-)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
Ubqln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X21,228,809 - 21,232,228 (-)NCBIGRCr8
mRatBN7.2X17,853,086 - 17,856,505 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX17,853,114 - 17,856,505 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX15,251,663 - 15,255,083 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X24,869,844 - 24,873,264 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X18,312,169 - 18,315,589 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X18,723,313 - 18,726,732 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX18,723,341 - 18,726,732 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X19,487,954 - 19,491,373 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X37,992,907 - 37,996,327 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX18,131,544 - 18,134,964 (-)NCBICelera
Cytogenetic MapXq12NCBI
Ubqln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554753,260,503 - 3,262,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554753,260,209 - 3,263,586 (+)NCBIChiLan1.0ChiLan1.0
UBQLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X57,999,446 - 58,003,742 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X58,003,059 - 58,008,444 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X48,829,844 - 48,835,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X56,981,696 - 56,985,979 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX56,981,985 - 56,983,859 (+)Ensemblpanpan1.1panPan2
UBQLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X47,860,923 - 47,864,282 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX39,057,141 - 39,060,488 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X48,117,445 - 48,120,792 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X47,357,992 - 47,361,339 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X48,101,497 - 48,104,844 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X48,016,846 - 48,020,193 (+)NCBIUU_Cfam_GSD_1.0
Ubqln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X40,500,402 - 40,503,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936819532,037 - 533,920 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936819530,833 - 534,185 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX48,948,389 - 48,950,263 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X48,948,062 - 48,951,392 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBQLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X52,486,154 - 52,489,531 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX52,486,454 - 52,488,328 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660866,589,262 - 6,593,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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RefSeq Transcripts XM_004873568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01103042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH172768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000028355   ⟹   ENSHGLP00000028014
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249101,548,249 - 1,550,126 (+)Ensembl
RefSeq Acc Id: XM_004873568   ⟹   XP_004873625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249101,547,942 - 1,551,323 (+)NCBI
Protein RefSeqs XP_004873625 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15242 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028014
RefSeq Acc Id: XP_004873625   ⟸   XM_004873568
- UniProtKB: G5C131 (UniProtKB/TrEMBL),   A0AAX6QFF1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028014   ⟸   ENSHGLT00000028355



1 to 27 of 27 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000020145 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028355 ENTREZGENE
Gene3D-CATH 1.10.260.100 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  STI1_HS-bd UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquilin UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Ubqln2 ENTREZGENE
PANTHER UBIQUILIN UniProtKB/TrEMBL
  UBIQUILIN-2 UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  Ubiquitin-like UniProtKB/TrEMBL
UniProt A0AAX6QFF1 ENTREZGENE, UniProtKB/TrEMBL
  G5C131 ENTREZGENE, UniProtKB/TrEMBL
1 to 27 of 27 rows