Rbm46 (RNA binding motif protein 46) - Rat Genome Database

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Gene: Rbm46 (RNA binding motif protein 46) Heterocephalus glaber
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Symbol: Rbm46
Name: RNA binding motif protein 46
RGD ID: 18920970
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN cell cycle switching, mitotic to meiotic cell cycle (ortholog); female meiotic nuclear division (ortholog); male meiotic nuclear division (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable RNA-binding protein 46; Putative RNA-binding protein 46
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248483,482,539 - 3,532,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Rbm46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248483,482,539 - 3,532,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBM46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384154,781,272 - 154,828,813 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4154,781,213 - 154,828,813 (+)EnsemblGRCh38hg38GRCh38
GRCh374155,702,424 - 155,749,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364155,921,950 - 155,969,415 (+)NCBINCBI36Build 36hg18NCBI36
Celera4153,033,415 - 153,080,956 (+)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4151,443,108 - 151,490,546 (+)NCBIHuRef
CHM1_14155,680,305 - 155,727,841 (+)NCBICHM1_1
T2T-CHM13v2.04158,113,066 - 158,160,632 (+)NCBIT2T-CHM13v2.0
Rbm46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39382,743,828 - 82,783,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl382,744,535 - 82,783,790 (-)EnsemblGRCm39 Ensembl
GRCm38382,836,521 - 82,876,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl382,837,228 - 82,876,483 (-)EnsemblGRCm38mm10GRCm38
MGSCv37382,641,155 - 82,680,405 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36382,923,160 - 82,962,410 (-)NCBIMGSCv36mm8
Celera382,847,962 - 82,887,223 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map336.75NCBI
Rbm46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,496,383 - 170,548,101 (-)NCBIGRCr8
mRatBN7.22168,198,324 - 168,242,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2168,198,463 - 168,242,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2175,388,944 - 175,432,055 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,409,876 - 173,452,987 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02168,011,294 - 168,054,403 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02181,828,931 - 181,874,223 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2181,831,244 - 181,874,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02201,202,750 - 201,288,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42174,571,323 - 174,614,302 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2162,225,766 - 162,268,745 (-)NCBICelera
Cytogenetic Map2q34NCBI
Rbm46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547112,096,400 - 12,167,536 (-)NCBIChiLan1.0ChiLan1.0
RBM46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23152,694,721 - 152,742,344 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14153,050,034 - 153,097,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04147,148,767 - 147,196,342 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14158,966,658 - 159,014,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4158,966,658 - 159,014,240 (+)Ensemblpanpan1.1panPan2
RBM46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,427,852 - 52,478,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,441,960 - 52,477,453 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1552,772,405 - 52,823,290 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01553,114,305 - 53,165,252 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1553,127,875 - 53,163,746 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,368,921 - 52,419,786 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,474,761 - 52,525,583 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01552,789,979 - 52,840,873 (+)NCBIUU_Cfam_GSD_1.0
Rbm46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530137,972,056 - 38,014,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365761,532,036 - 1,574,858 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365761,532,036 - 1,574,858 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,337,319 - 74,382,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1874,337,324 - 74,383,044 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,635,269 - 78,680,980 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17101,330,930 - 101,381,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7101,348,421 - 101,381,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603780,986,681 - 81,036,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021247474   ⟹   XP_021103133
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248483,482,539 - 3,532,577 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021103133 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16814 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021103133   ⟸   XM_021247474
- UniProtKB: A0AAX6S3Q0 (UniProtKB/TrEMBL),   A0A0P6J981 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro HnRNP_R/Q_splicing_fac UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM46_DSRM UniProtKB/TrEMBL
  RBM46_RRM1 UniProtKB/TrEMBL
  RBM46_RRM2 UniProtKB/TrEMBL
  RBM46_RRM3 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Rbm46 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 46-RELATED UniProtKB/TrEMBL
Pfam DND1_DSRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0P6J981 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S3Q0 ENTREZGENE, UniProtKB/TrEMBL