Rbm46 (RNA binding motif protein 46) - Rat Genome Database

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Gene: Rbm46 (RNA binding motif protein 46) Heterocephalus glaber
Analyze
Symbol: Rbm46
Name: RNA binding motif protein 46
RGD ID: 18920970
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); INVOLVED IN cell cycle switching, mitotic to meiotic cell cycle (ortholog); female meiotic nuclear division (ortholog); male meiotic nuclear division (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable RNA-binding protein 46; Putative RNA-binding protein 46
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248483,482,539 - 3,532,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Rbm46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248483,482,539 - 3,532,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RBM46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384154,781,272 - 154,828,813 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4154,781,213 - 154,828,813 (+)EnsemblGRCh38hg38GRCh38
GRCh374155,702,424 - 155,749,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364155,921,950 - 155,969,415 (+)NCBINCBI36Build 36hg18NCBI36
Celera4153,033,415 - 153,080,956 (+)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4151,443,108 - 151,490,546 (+)NCBIHuRef
CHM1_14155,680,305 - 155,727,841 (+)NCBICHM1_1
T2T-CHM13v2.04158,113,066 - 158,160,632 (+)NCBIT2T-CHM13v2.0
Rbm46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39382,743,828 - 82,783,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl382,744,535 - 82,783,790 (-)EnsemblGRCm39 Ensembl
GRCm38382,836,521 - 82,876,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl382,837,228 - 82,876,483 (-)EnsemblGRCm38mm10GRCm38
MGSCv37382,641,155 - 82,680,405 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36382,923,160 - 82,962,410 (-)NCBIMGSCv36mm8
Celera382,847,962 - 82,887,223 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map336.75NCBI
Rbm46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,496,383 - 170,548,101 (-)NCBIGRCr8
mRatBN7.22168,198,324 - 168,242,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2168,198,463 - 168,242,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2175,388,944 - 175,432,055 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,409,876 - 173,452,987 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02168,011,294 - 168,054,403 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02181,828,931 - 181,874,223 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2181,831,244 - 181,874,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02201,202,750 - 201,288,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42174,571,323 - 174,614,302 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2162,225,766 - 162,268,745 (-)NCBICelera
Cytogenetic Map2q34NCBI
Rbm46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547112,096,400 - 12,167,536 (-)NCBIChiLan1.0ChiLan1.0
RBM46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23152,694,721 - 152,742,344 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14153,050,034 - 153,097,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04147,148,767 - 147,196,342 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14158,966,658 - 159,014,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4158,966,658 - 159,014,240 (+)Ensemblpanpan1.1panPan2
RBM46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,427,852 - 52,478,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,441,960 - 52,477,453 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1552,772,405 - 52,823,290 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01553,114,305 - 53,165,252 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1553,127,875 - 53,163,746 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,368,921 - 52,419,786 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,474,761 - 52,525,583 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01552,789,979 - 52,840,873 (+)NCBIUU_Cfam_GSD_1.0
Rbm46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530137,972,056 - 38,014,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365761,532,036 - 1,574,858 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365761,532,036 - 1,574,858 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,337,319 - 74,382,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1874,337,324 - 74,383,044 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,635,269 - 78,680,980 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17101,330,930 - 101,381,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7101,348,421 - 101,381,184 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603780,986,681 - 81,036,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021247474   ⟹   XP_021103133
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248483,482,539 - 3,532,577 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021103133 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16814 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021103133   ⟸   XM_021247474
- UniProtKB: A0A0P6J981 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro HnRNP_R/Q_splicing_fac UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM46_DSRM UniProtKB/TrEMBL
  RBM46_RRM1 UniProtKB/TrEMBL
  RBM46_RRM2 UniProtKB/TrEMBL
  RBM46_RRM3 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Rbm46 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 46-RELATED UniProtKB/TrEMBL
Pfam DND1_DSRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0P6J981 ENTREZGENE, UniProtKB/TrEMBL