C1d (C1D nuclear receptor corepressor) - Rat Genome Database

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Gene: C1d (C1D nuclear receptor corepressor) Heterocephalus glaber
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Symbol: C1d
Name: C1D nuclear receptor corepressor
RGD ID: 18920561
Description: ENCODES a protein that exhibits nuclear receptor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN nucleoplasm (ortholog); transcription repressor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear nucleic acid-binding protein C1D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247625,242,843 - 5,256,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
C1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247625,242,843 - 5,256,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,041,130 - 68,063,004 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,041,130 - 68,110,948 (-)EnsemblGRCh38hg38GRCh38
GRCh37268,268,262 - 68,290,136 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36268,122,840 - 68,143,634 (-)NCBINCBI36Build 36hg18NCBI36
Celera268,118,951 - 68,139,778 (-)NCBICelera
Cytogenetic Map2p14NCBI
HuRef268,006,516 - 68,027,346 (-)NCBIHuRef
CHM1_1268,200,196 - 68,221,015 (-)NCBICHM1_1
T2T-CHM13v2.0268,051,683 - 68,073,563 (-)NCBIT2T-CHM13v2.0
C1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391117,207,547 - 17,219,176 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1117,207,579 - 17,219,176 (+)EnsemblGRCm39 Ensembl
GRCm381117,257,547 - 17,269,176 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1117,257,579 - 17,269,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv371117,157,621 - 17,169,179 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361117,157,621 - 17,169,179 (+)NCBIMGSCv36mm8
Celera1117,632,025 - 17,643,583 (+)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.89NCBI
C1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,862,550 - 95,874,796 (+)NCBIGRCr8
mRatBN7.21491,660,951 - 91,673,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,660,989 - 91,672,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1495,968,166 - 95,980,375 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01497,212,496 - 97,224,705 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,677,566 - 93,689,775 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,415,645 - 100,427,878 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,415,668 - 100,427,260 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014100,111,604 - 100,124,172 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41498,153,633 - 98,166,585 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1490,706,936 - 90,719,163 (+)NCBICelera
Cytogenetic Map14q22NCBI
C1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,786,397 - 16,802,872 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542416,787,094 - 16,801,600 (+)NCBIChiLan1.0ChiLan1.0
C1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21258,341,552 - 58,362,425 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A58,345,500 - 58,367,398 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,094,315 - 68,115,176 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A69,218,972 - 69,239,781 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A69,218,972 - 69,240,261 (-)Ensemblpanpan1.1panPan2
C1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,160,168 - 67,165,737 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,161,469 - 67,165,741 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,051,418 - 67,070,335 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,179,369 - 68,198,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,177,992 - 68,198,852 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11067,863,984 - 67,882,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,161,261 - 68,180,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01068,457,170 - 68,476,182 (-)NCBIUU_Cfam_GSD_1.0
C1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629216,037,206 - 16,053,613 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649112,515,854 - 12,534,091 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649112,517,679 - 12,534,052 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl374,136,624 - 74,153,747 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1374,133,665 - 74,153,756 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2377,665,599 - 77,685,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11439,019,972 - 39,043,109 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1439,019,588 - 39,044,032 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604572,896,821 - 72,917,353 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004849948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01042761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004849948   ⟹   XP_004850005
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247625,242,843 - 5,256,130 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850005 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017216
RefSeq Acc Id: XP_004850005   ⟸   XM_004849948
- UniProtKB: A0AAX6PEH6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012332 ENTREZGENE
Ensembl Transcript ENSHGLT00000017389 ENTREZGENE
InterPro Exosome-assoc_fac/DNA_repair UniProtKB/TrEMBL
  Sas10/Utp3/C1D UniProtKB/TrEMBL
NCBI Gene C1d ENTREZGENE
PANTHER NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D UniProtKB/TrEMBL
  SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR UniProtKB/TrEMBL
Pfam Sas10_Utp3 UniProtKB/TrEMBL
UniProt A0AAX6PEH6 ENTREZGENE, UniProtKB/TrEMBL