Hnrnph1 (heterogeneous nuclear ribonucleoprotein H1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Hnrnph1 (heterogeneous nuclear ribonucleoprotein H1) Heterocephalus glaber
Analyze
Symbol: Hnrnph1
Name: heterogeneous nuclear ribonucleoprotein H1
RGD ID: 18919120
Description: ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); cellular response to peptide (ortholog); regulation of RNA splicing (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Experimental Autoimmune Orchitis (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein H; heterogeneous nuclear ribonucleoprotein H1 (H)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,538,159 - 42,548,249 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hnrnph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,538,159 - 42,548,249 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HNRNPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,614,178 - 179,634,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,614,178 - 179,634,784 (-)EnsemblGRCh38hg38GRCh38
GRCh375179,041,179 - 179,061,785 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365178,973,786 - 178,983,276 (-)NCBINCBI36Build 36hg18NCBI36
Build 345178,973,785 - 178,983,276NCBI
Celera5174,670,146 - 174,679,127 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5173,768,106 - 173,777,652 (-)NCBIHuRef
CHM1_15178,473,644 - 178,483,178 (-)NCBICHM1_1
T2T-CHM13v2.05180,168,628 - 180,189,994 (-)NCBIT2T-CHM13v2.0
Hnrnph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,266,084 - 50,277,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,267,817 - 50,277,355 (+)EnsemblGRCm39 Ensembl
GRCm381150,375,257 - 50,386,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,376,990 - 50,386,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv371150,191,221 - 50,200,030 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,221,186 - 50,229,948 (+)NCBIMGSCv36mm8
Celera1154,938,368 - 54,947,177 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.56NCBI
Hnrnph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,187,412 - 35,203,909 (+)NCBIGRCr8
mRatBN7.21034,692,868 - 34,702,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1034,693,555 - 34,702,846 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,365,683 - 39,374,987 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0107,904,939 - 7,914,243 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,359,365 - 34,368,669 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01035,872,619 - 35,879,911 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1035,870,232 - 35,879,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01035,644,079 - 35,651,370 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,922,840 - 35,930,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11035,923,888 - 35,931,180 (+)NCBI
Celera1034,044,661 - 34,051,957 (+)NCBICelera
Cytogenetic Map10q22NCBI
Hnrnph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955408936,595 - 948,064 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955408937,706 - 944,969 (+)NCBIChiLan1.0ChiLan1.0
HNRNPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,553,279 - 174,563,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,692,818 - 172,703,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05174,764,771 - 174,775,201 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15182,044,229 - 182,053,647 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5182,044,549 - 182,053,635 (-)Ensemblpanpan1.1panPan2
HNRNPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1112,050,753 - 2,059,999 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl112,050,871 - 2,059,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,173,488 - 2,182,754 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0112,025,055 - 2,034,321 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl112,025,089 - 2,034,094 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,996,529 - 2,005,793 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0112,075,126 - 2,084,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,315,878 - 2,325,144 (+)NCBIUU_Cfam_GSD_1.0
Hnrnph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213119,925,451 - 119,934,866 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367391,135,289 - 1,144,643 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367391,135,282 - 1,144,643 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl278,963,309 - 78,969,949 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1278,961,456 - 78,971,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,528,404 - 80,538,405 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12381,330,777 - 81,340,470 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2381,330,351 - 81,339,882 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607512,697,976 - 12,708,643 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026309   ⟹   ENSHGLP00000026078
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473342,538,159 - 42,548,249 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000026310   ⟹   ENSHGLP00000026079
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473342,538,159 - 42,548,249 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000026311   ⟹   ENSHGLP00000026080
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473342,538,286 - 42,548,081 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000026312   ⟹   ENSHGLP00000026081
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473342,539,625 - 42,547,324 (-)Ensembl
RefSeq Acc Id: XM_013065161   ⟹   XP_012920615
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_013065168   ⟹   XP_012920622
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_013065173   ⟹   XP_012920627
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242281   ⟹   XP_021097940
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242284   ⟹   XP_021097943
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242291   ⟹   XP_021097950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242300   ⟹   XP_021097959
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242309   ⟹   XP_021097968
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242319   ⟹   XP_021097978
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XM_021242339   ⟹   XP_021097998
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473342,538,286 - 42,547,911 (-)NCBI
RefSeq Acc Id: XP_021097968   ⟸   XM_021242309
- Peptide Label: isoform X6
- UniProtKB: G5C7B7 (UniProtKB/TrEMBL),   A0AAX6RMD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097998   ⟸   XM_021242339
- Peptide Label: isoform X9
- UniProtKB: G5C2S9 (UniProtKB/TrEMBL),   A0AAX6RMG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012920627   ⟸   XM_013065173
- Peptide Label: isoform X4
- UniProtKB: G5C7B7 (UniProtKB/TrEMBL),   A0AAX6QLK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012920615   ⟸   XM_013065161
- Peptide Label: isoform X8
- UniProtKB: G5C7B7 (UniProtKB/TrEMBL),   A0AAX6QKX1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097978   ⟸   XM_021242319
- Peptide Label: isoform X7
- UniProtKB: G5C7B7 (UniProtKB/TrEMBL),   A0AAX6RQC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012920622   ⟸   XM_013065168
- Peptide Label: isoform X10
- UniProtKB: G5C2S9 (UniProtKB/TrEMBL),   A0AAX6QJ98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097943   ⟸   XM_021242284
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RNP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097959   ⟸   XM_021242300
- Peptide Label: isoform X5
- UniProtKB: G5C2S9 (UniProtKB/TrEMBL),   A0AAX6RNG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097940   ⟸   XM_021242281
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RPC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097950   ⟸   XM_021242291
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RLF9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026080   ⟸   ENSHGLT00000026311
Ensembl Acc Id: ENSHGLP00000026079   ⟸   ENSHGLT00000026310
Ensembl Acc Id: ENSHGLP00000026078   ⟸   ENSHGLT00000026309
Ensembl Acc Id: ENSHGLP00000026081   ⟸   ENSHGLT00000026312


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018565 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026310 ENTREZGENE
  ENSHGLT00000026311 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro ESRP UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  Znf_CHHC UniProtKB/TrEMBL
NCBI Gene Hnrnph1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H2 UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
  zf-RNPHF UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt A0AAX6QJ98 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QKX1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QLK2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RLF9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RMD3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RMG8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RNG4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RNP9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RPC7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQC8 ENTREZGENE, UniProtKB/TrEMBL
  G5C2S9 ENTREZGENE, UniProtKB/TrEMBL
  G5C7B7 ENTREZGENE, UniProtKB/TrEMBL