Hilpda (hypoxia inducible lipid droplet associated) - Rat Genome Database

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Gene: Hilpda (hypoxia inducible lipid droplet associated) Heterocephalus glaber
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Symbol: Hilpda
Name: hypoxia inducible lipid droplet associated
RGD ID: 18918614
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); lung metastasis (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Hypoxia-inducible gene 2 protein; hypoxia-inducible lipid droplet-associated protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,536,167 - 7,538,418 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,536,257 - 7,538,380 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hilpda
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,536,167 - 7,538,418 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,536,257 - 7,538,380 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HILPDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,455,878 - 128,458,418 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,455,849 - 128,458,418 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,095,932 - 128,098,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367127,883,120 - 127,885,708 (+)NCBINCBI36Build 36hg18NCBI36
Celera7122,898,995 - 122,901,582 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,456,719 - 122,459,307 (+)NCBIHuRef
CHM1_17128,029,431 - 128,032,018 (+)NCBICHM1_1
T2T-CHM13v2.07129,767,662 - 129,770,201 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,478,995 - 127,481,583 (+)NCBI
Hilpda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,272,487 - 29,275,448 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,272,487 - 29,275,445 (+)EnsemblGRCm39 Ensembl
GRCm38629,272,488 - 29,275,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,272,488 - 29,275,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,222,488 - 29,225,449 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,222,680 - 29,225,454 (+)NCBIMGSCv36mm8
Celera629,277,967 - 29,280,928 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Hilpda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8458,836,463 - 58,839,423 (+)NCBIGRCr8
mRatBN7.2457,871,088 - 57,874,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl457,871,110 - 57,874,557 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx462,853,822 - 62,856,785 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0458,769,980 - 58,772,943 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,171,873 - 57,174,836 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,547,600 - 56,550,584 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,549,739 - 56,549,993 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,314,756 - 56,317,745 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,146,654 - 56,147,441 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera452,979,105 - 52,982,089 (+)NCBICelera
Cytogenetic Map4q22NCBI
Hilpda
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554799,453,627 - 9,455,680 (+)NCBIChiLan1.0ChiLan1.0
HILPDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,309,886 - 165,312,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,320,156 - 17,322,741 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,446,572 - 120,449,174 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,099,119 - 133,101,669 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,100,523 - 133,100,714 (+)Ensemblpanpan1.1panPan2
HILPDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,957,811 - 7,959,878 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,644,718 - 7,646,660 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,724,627 - 7,726,553 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1147,929,544 - 7,931,470 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,670,714 - 7,672,656 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,816,856 - 7,818,801 (-)NCBIUU_Cfam_GSD_1.0
Hilpda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511854,457,494 - 54,459,444 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647915,582,260 - 15,607,428 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647915,582,260 - 15,583,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HILPDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,944,930 - 19,947,080 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,944,929 - 19,947,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21821,014,116 - 21,016,244 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HILPDA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,254,246 - 97,257,186 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660426,148,354 - 6,150,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000018371   ⟹   ENSHGLP00000018190
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247837,536,167 - 7,538,418 (-)Ensembl
RefSeq Acc Id: XM_004856394   ⟹   XP_004856451
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,536,257 - 7,538,380 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856451 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB08660 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018190
GenBank Protein JAO00441 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004856451   ⟸   XM_004856394
- UniProtKB: G5BH99 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018190   ⟸   ENSHGLT00000018371


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013002 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018371 ENTREZGENE
InterPro Hipoxia_HILPDA UniProtKB/TrEMBL
KEGG Report hgl:101720002 UniProtKB/TrEMBL
NCBI Gene Hilpda ENTREZGENE
PANTHER HYPOXIA-INDUCIBLE LIPID DROPLET-ASSOCIATED PROTEIN UniProtKB/TrEMBL
  PTHR16886 UniProtKB/TrEMBL
Pfam HILPDA UniProtKB/TrEMBL
UniProt G5BH99 ENTREZGENE, UniProtKB/TrEMBL