Katnal2 (katanin catalytic subunit A1 like 2) - Rat Genome Database

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Gene: Katnal2 (katanin catalytic subunit A1 like 2) Heterocephalus glaber
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Symbol: Katnal2
Name: katanin catalytic subunit A1 like 2
RGD ID: 18918082
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); isomerase activity (inferred); INVOLVED IN microtubule severing (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); microtubule (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: katanin p60 ATPase-containing subunit A-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477810,561,459 - 10,663,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477810,599,429 - 10,664,022 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Katnal2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477810,561,459 - 10,663,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477810,599,429 - 10,664,022 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KATNAL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381846,917,594 - 47,102,243 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1846,917,492 - 47,103,478 (+)EnsemblGRCh38hg38GRCh38
GRCh371844,497,557 - 44,628,614 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361842,780,785 - 42,881,661 (+)NCBINCBI36Build 36hg18NCBI36
Build 341842,780,784 - 42,881,659NCBI
Celera1841,429,772 - 41,479,137 (+)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1841,427,284 - 41,476,671 (+)NCBIHuRef
CHM1_11844,453,895 - 44,623,785 (+)NCBICHM1_1
T2T-CHM13v2.01847,108,258 - 47,292,540 (+)NCBIT2T-CHM13v2.0
Katnal2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391877,063,725 - 77,135,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1877,064,844 - 77,135,004 (-)EnsemblGRCm39 Ensembl
GRCm381876,976,029 - 77,047,311 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1876,977,148 - 77,047,308 (-)EnsemblGRCm38mm10GRCm38
MGSCv371877,231,939 - 77,286,035 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361877,197,650 - 77,251,746 (-)NCBIMGSCv36mm8
Celera1878,176,788 - 78,230,801 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1852.02NCBI
Katnal2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81872,806,967 - 72,883,091 (-)NCBIGRCr8
mRatBN7.21870,531,759 - 70,607,886 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1870,531,754 - 70,608,082 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01873,283,756 - 73,360,367 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1873,283,748 - 73,360,373 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01872,961,624 - 73,036,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41873,955,032 - 73,998,321 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1869,056,377 - 69,130,209 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Katnal2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540232,407,745 - 32,490,009 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540232,407,994 - 32,490,009 (+)NCBIChiLan1.0ChiLan1.0
KATNAL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21764,339,271 - 64,637,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11850,031,871 - 50,330,194 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01840,196,170 - 40,492,175 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11843,729,436 - 43,850,517 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1843,758,249 - 43,850,517 (+)Ensemblpanpan1.1panPan2
KATNAL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1744,359,777 - 44,454,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl744,366,182 - 44,437,346 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha743,846,924 - 43,938,162 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0744,316,039 - 44,407,835 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl744,323,759 - 44,390,306 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1744,016,052 - 44,107,814 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0744,070,112 - 44,161,863 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0744,353,890 - 44,445,628 (-)NCBIUU_Cfam_GSD_1.0
Katnal2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494440,598,419 - 40,664,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493698325,386 - 73,791 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493698337,876 - 75,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KATNAL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl196,566,848 - 96,676,519 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1196,566,852 - 96,676,184 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KATNAL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11833,848,471 - 33,967,832 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1833,848,748 - 33,907,092 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660508,152,696 - 8,306,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008871   ⟹   ENSHGLP00000008776
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477810,561,459 - 10,663,686 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000008872   ⟹   ENSHGLP00000008777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477810,606,839 - 10,663,686 (+)Ensembl
RefSeq Acc Id: XM_004855105   ⟹   XP_004855162
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477810,599,429 - 10,664,022 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004855162 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008777
GenBank Protein JAN97211 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004855162   ⟸   XM_004855105
- UniProtKB: A0A0P6JA20 (UniProtKB/TrEMBL),   G5C614 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008776   ⟸   ENSHGLT00000008871
Ensembl Acc Id: ENSHGLP00000008777   ⟸   ENSHGLT00000008872


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006317 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008872 ENTREZGENE
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  Katanin_p60_AL2 UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  MT-severing_AAA_ATPase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Katnal2 ENTREZGENE
PANTHER AAA DOMAIN-CONTAINING UniProtKB/TrEMBL
  KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6JA20 ENTREZGENE, UniProtKB/TrEMBL
  G5C614 ENTREZGENE, UniProtKB/TrEMBL