Stc1 (stanniocalcin 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Stc1 (stanniocalcin 1) Heterocephalus glaber
Analyze
Symbol: Stc1
Name: stanniocalcin 1
RGD ID: 18917423
Description: ENCODES a protein that exhibits hormone activity (inferred); identical protein binding (inferred); INVOLVED IN cellular response to cAMP (ortholog); cellular response to glucocorticoid stimulus (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH Reperfusion Injury (ortholog); FOUND IN apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Stanniocalcin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475819,035,338 - 19,047,871 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475819,035,478 - 19,047,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475819,035,338 - 19,047,871 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475819,035,478 - 19,047,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38823,841,929 - 23,854,806 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl823,841,929 - 23,854,806 (-)EnsemblGRCh38hg38GRCh38
GRCh37823,699,442 - 23,712,319 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36823,755,379 - 23,768,265 (-)NCBINCBI36Build 36hg18NCBI36
Build 34823,755,378 - 23,768,265NCBI
Celera822,662,875 - 22,675,765 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef822,244,578 - 22,257,479 (-)NCBIHuRef
CHM1_1823,901,587 - 23,914,473 (-)NCBICHM1_1
T2T-CHM13v2.0824,116,910 - 24,129,801 (-)NCBIT2T-CHM13v2.0
Stc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391469,266,738 - 69,278,850 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1469,266,687 - 69,279,253 (+)EnsemblGRCm39 Ensembl
GRCm381469,029,289 - 69,041,401 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1469,029,238 - 69,041,804 (+)EnsemblGRCm38mm10GRCm38
MGSCv371469,647,346 - 69,659,458 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361467,982,568 - 67,994,944 (+)NCBIMGSCv36mm8
Celera1466,805,718 - 66,817,778 (+)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1435.98NCBI
Stc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81550,709,439 - 50,720,093 (+)NCBIGRCr8
mRatBN7.21544,299,591 - 44,311,695 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1544,299,621 - 44,310,264 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1548,417,544 - 48,428,198 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01549,529,038 - 49,539,692 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01546,388,378 - 46,399,032 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01550,891,137 - 50,901,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1550,891,127 - 50,903,162 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01554,622,230 - 54,632,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41549,566,885 - 49,577,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11549,582,664 - 49,593,308 (+)NCBI
Celera1543,995,170 - 44,005,824 (+)NCBICelera
Cytogenetic Map15p11NCBI
Stc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,969,677 - 46,982,191 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540346,969,837 - 46,982,075 (-)NCBIChiLan1.0ChiLan1.0
STC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2742,344,546 - 42,357,436 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1818,071,706 - 18,084,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0823,089,339 - 23,102,245 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1820,023,469 - 20,036,321 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl820,023,469 - 20,036,321 (-)Ensemblpanpan1.1panPan2
STC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12533,615,436 - 33,628,138 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2533,615,451 - 33,625,218 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2534,203,874 - 34,216,361 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02533,824,454 - 33,836,948 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2533,824,446 - 33,834,228 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12533,768,855 - 33,781,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02533,623,824 - 33,636,315 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02533,778,666 - 33,791,304 (+)NCBIUU_Cfam_GSD_1.0
Stc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494311,319,017 - 11,331,358 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365557,239,198 - 7,251,670 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365557,240,649 - 7,251,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl147,950,434 - 7,961,566 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1147,952,175 - 7,961,365 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2148,806,997 - 8,816,468 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1821,975,286 - 21,988,182 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl821,975,283 - 21,988,198 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605220,209,581 - 20,222,466 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020702   ⟹   ENSHGLP00000020500
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475819,035,338 - 19,047,871 (-)Ensembl
RefSeq Acc Id: XM_004848354   ⟹   XP_004848411
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475819,035,478 - 19,047,633 (-)NCBI
RefSeq Acc Id: XM_021261289   ⟹   XP_021116948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475819,035,478 - 19,047,633 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004848411 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116948 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020500
  ENSHGLP00000048371
  ENSHGLP00100037453
RefSeq Acc Id: XP_004848411   ⟸   XM_004848354
- Peptide Label: isoform X1
- UniProtKB: G5B9S3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116948   ⟸   XM_021261289
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000020500   ⟸   ENSHGLT00000020702


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014654 Ensembl, ENTREZGENE
  ENSHGLG00000040196 UniProtKB/TrEMBL
  ENSHGLG00100047273 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020702 ENTREZGENE
  ENSHGLT00000091326 UniProtKB/TrEMBL
  ENSHGLT00100056452 UniProtKB/TrEMBL
InterPro Stanniocalcin UniProtKB/TrEMBL
KEGG Report hgl:101702749 UniProtKB/TrEMBL
NCBI Gene Stc1 ENTREZGENE
PANTHER PTHR11245 UniProtKB/TrEMBL
  STANNIOCALCIN-1 UniProtKB/TrEMBL
Pfam Stanniocalcin UniProtKB/TrEMBL
UniProt G5B9S3 ENTREZGENE, UniProtKB/TrEMBL