Znf106 (zinc finger protein 106) - Rat Genome Database

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Gene: Znf106 (zinc finger protein 106) Heterocephalus glaber
Analyze
Symbol: Znf106
Name: zinc finger protein 106
RGD ID: 18916624
Description: ENCODES a protein that exhibits opioid peptide activity (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248049,513,090 - 9,606,758 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf106
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248049,513,090 - 9,606,758 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF106
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,412,823 - 42,491,141 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,412,823 - 42,491,141 (-)EnsemblGRCh38hg38GRCh38
GRCh371542,705,021 - 42,783,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,492,313 - 40,537,019 (-)NCBINCBI36Build 36hg18NCBI36
Build 341540,492,313 - 40,537,022NCBI
Celera1519,472,730 - 19,517,437 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1519,553,142 - 19,597,638 (-)NCBIHuRef
CHM1_11542,823,506 - 42,868,172 (-)NCBICHM1_1
T2T-CHM13v2.01540,218,871 - 40,297,183 (-)NCBIT2T-CHM13v2.0
Zfp106
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,337,303 - 120,394,345 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,337,301 - 120,394,324 (-)EnsemblGRCm39 Ensembl
GRCm382120,506,820 - 120,563,864 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,506,820 - 120,563,843 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,332,566 - 120,389,567 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,201,054 - 120,255,231 (-)NCBIMGSCv36mm8
Celera2121,660,934 - 121,716,678 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Zfp106
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,912,981 - 127,964,254 (-)NCBIGRCr8
mRatBN7.23107,459,232 - 107,510,507 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,462,096 - 107,510,481 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03112,279,782 - 112,330,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,283,112 - 112,320,762 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,827,186 - 118,857,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3106,368,014 - 106,418,966 (-)NCBICelera
Cytogenetic Map3q35NCBI
Znf106
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554169,118,812 - 9,183,583 (-)NCBIChiLan1.0ChiLan1.0
ZNF106
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,662,415 - 31,741,644 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,815,641 - 35,898,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,372,911 - 21,452,149 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,529,324 - 39,608,427 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,533,822 - 39,608,427 (-)Ensemblpanpan1.1panPan2
ZNF106
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,389,184 - 9,452,891 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,392,761 - 9,452,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,447,215 - 9,510,891 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,524,502 - 9,588,442 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,524,506 - 9,588,452 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,444,191 - 9,507,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,550,038 - 9,614,102 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,683,291 - 9,746,989 (-)NCBIUU_Cfam_GSD_1.0
Znf106
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,864,589 - 87,931,764 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364715,712,655 - 5,779,827 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF106
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1128,893,971 - 128,957,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11128,893,965 - 128,957,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,786,697 - 143,851,832 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF106
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,486,801 - 40,567,811 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,486,913 - 40,563,332 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,446,196 - 100,525,254 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004861739   ⟹   XP_004861796
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248049,513,090 - 9,606,758 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004861796 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004861796   ⟸   XM_004861739
- UniProtKB: G5BM29 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH YVTN repeat-like/Quinoprotein amine dehydrogenase UniProtKB/TrEMBL
InterPro PQQ_beta_propeller_repeat UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  Znf106 UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf106 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 106 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 106 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
SMART PQQ UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40 repeat-like UniProtKB/TrEMBL
UniProt G5BM29 ENTREZGENE, UniProtKB/TrEMBL