Suco (SUN domain containing ossification factor) - Rat Genome Database

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Gene: Suco (SUN domain containing ossification factor) Heterocephalus glaber
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Symbol: Suco
Name: SUN domain containing ossification factor
RGD ID: 18916302
Description: INVOLVED IN positive regulation of collagen biosynthetic process (ortholog); positive regulation of osteoblast differentiation (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autoimmune lymphoproliferative syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN rough endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SUN domain-containing ossification factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247719,096,453 - 9,168,731 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247719,094,893 - 9,168,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Suco
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247719,096,453 - 9,168,731 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247719,094,893 - 9,168,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SUCO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,532,349 - 172,611,833 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,532,349 - 172,611,833 (+)EnsemblGRCh38hg38GRCh38
GRCh371172,501,489 - 172,580,973 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,768,112 - 170,847,594 (+)NCBINCBI36Build 36hg18NCBI36
Build 341169,233,145 - 169,312,628NCBI
Celera1145,611,714 - 145,690,427 (+)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1143,726,516 - 143,805,573 (+)NCBIHuRef
CHM1_11173,924,412 - 174,003,286 (+)NCBICHM1_1
T2T-CHM13v2.01171,889,056 - 171,968,934 (+)NCBIT2T-CHM13v2.0
Suco
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,643,681 - 161,704,506 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,643,683 - 161,704,251 (-)EnsemblGRCm39 Ensembl
GRCm381161,816,112 - 161,876,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,816,114 - 161,876,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv371163,746,243 - 163,806,792 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361163,652,790 - 163,713,822 (-)NCBIMGSCv36mm8
Celera1164,271,070 - 164,331,590 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.95NCBI
Suco
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81376,726,095 - 76,791,174 (-)NCBIGRCr8
mRatBN7.21374,192,808 - 74,257,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,193,573 - 74,257,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,763,182 - 76,827,500 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,070,281 - 78,134,592 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01375,330,141 - 75,394,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01379,736,485 - 79,801,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,736,482 - 79,801,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,629,768 - 84,694,850 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,512,517 - 77,575,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,526,704 - 77,589,980 (-)NCBI
Celera1373,947,829 - 74,010,497 (-)NCBICelera
Cytogenetic Map13q22NCBI
Suco
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,985,856 - 13,065,855 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,985,339 - 13,064,863 (+)NCBIChiLan1.0ChiLan1.0
SUCO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2177,131,516 - 77,213,205 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1176,811,510 - 76,893,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01148,030,922 - 148,112,755 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11151,740,627 - 151,821,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1151,739,934 - 151,821,285 (+)Ensemblpanpan1.1panPan2
SUCO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1726,375,414 - 26,410,001 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl726,376,990 - 26,464,125 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha725,906,260 - 25,995,131 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0726,126,201 - 26,215,298 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl726,126,203 - 26,215,320 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1726,037,094 - 26,126,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0726,107,058 - 26,196,508 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0726,257,807 - 26,346,923 (-)NCBIUU_Cfam_GSD_1.0
Suco
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,976,873 - 97,045,569 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,823,253 - 14,892,318 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648114,823,622 - 14,892,312 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUCO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,916,855 - 115,007,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,916,957 - 115,007,979 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29126,512,893 - 126,604,568 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SUCO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12556,541,074 - 56,623,086 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2556,541,038 - 56,623,201 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605558,147,005 - 58,229,222 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026841   ⟹   ENSHGLP00000026605
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247719,096,453 - 9,168,731 (-)Ensembl
RefSeq Acc Id: XM_013075389   ⟹   XP_012930843
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,094,893 - 9,168,976 (-)NCBI
RefSeq Acc Id: XM_013075390   ⟹   XP_012930844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,094,893 - 9,168,989 (-)NCBI
RefSeq Acc Id: XM_021265411   ⟹   XP_021121070
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,094,893 - 9,168,882 (-)NCBI
RefSeq Acc Id: XM_021265412   ⟹   XP_021121071
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,094,893 - 9,131,347 (-)NCBI
RefSeq Acc Id: XR_001184029
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,096,768 - 9,168,825 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012930843 (Get FASTA)   NCBI Sequence Viewer  
  XP_012930844 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121070 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026605
GenBank Protein JAN97942 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012930844   ⟸   XM_013075390
- Peptide Label: isoform X4
- UniProtKB: A0AAX6QZG9 (UniProtKB/TrEMBL),   G5C7M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012930843   ⟸   XM_013075389
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QYJ5 (UniProtKB/TrEMBL),   G5C7M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121070   ⟸   XM_021265411
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J5S3 (UniProtKB/TrEMBL),   G5C7M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121071   ⟸   XM_021265412
- Peptide Label: isoform X3
- UniProtKB: A0AAX6TKP3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026605   ⟸   ENSHGLT00000026841


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018923 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026841 ENTREZGENE
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
InterPro Galactose-bd-like_sf UniProtKB/TrEMBL
  Suco/Slp1-like UniProtKB/TrEMBL
  SUN_dom UniProtKB/TrEMBL
NCBI Gene Suco ENTREZGENE
PANTHER PTHR12953 UniProtKB/TrEMBL
  SUN DOMAIN-CONTAINING OSSIFICATION FACTOR UniProtKB/TrEMBL
Pfam Sad1_UNC UniProtKB/TrEMBL
PROSITE SUN UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
UniProt A0A0P6J5S3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QYJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QZG9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6TKP3 ENTREZGENE, UniProtKB/TrEMBL
  G5C7M6 ENTREZGENE, UniProtKB/TrEMBL