Atg101 (autophagy related 101) - Rat Genome Database

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Gene: Atg101 (autophagy related 101) Heterocephalus glaber
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Symbol: Atg101
Name: autophagy related 101
RGD ID: 18916102
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); positive regulation of autophagy (ortholog); regulation of protein lipidation (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); colon cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN phagophore assembly site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Autophagy-related protein 101
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816255,432 - 262,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816255,443 - 261,636 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atg101
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816255,432 - 262,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816255,443 - 261,636 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATG101
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,065,300 - 52,077,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,069,246 - 52,077,495 (+)EnsemblGRCh38hg38GRCh38
GRCh371252,463,762 - 52,471,279 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,750,025 - 50,757,546 (+)NCBINCBI36Build 36hg18NCBI36
Celera1251,266,432 - 51,273,953 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,496,921 - 49,504,446 (+)NCBIHuRef
CHM1_11252,430,002 - 52,437,523 (+)NCBICHM1_1
T2T-CHM13v2.01252,028,879 - 52,041,075 (+)NCBIT2T-CHM13v2.0
Atg101
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,182,182 - 101,188,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,182,153 - 101,188,826 (+)EnsemblGRCm39 Ensembl
GRCm3815101,284,301 - 101,290,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,284,272 - 101,290,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,114,732 - 101,121,365 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,112,335 - 101,118,968 (+)NCBIMGSCv36mm8
Celera15103,432,360 - 103,438,993 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.67NCBI
Atg101
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,277,223 - 134,286,387 (+)NCBIGRCr8
mRatBN7.27132,398,477 - 132,407,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,398,483 - 132,407,633 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7134,200,027 - 134,209,527 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,429,543 - 136,439,043 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,339,980 - 136,348,905 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,929,381 - 142,938,559 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,929,400 - 142,938,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,730,251 - 140,739,416 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,029,813 - 140,038,925 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17140,106,249 - 140,115,362 (+)NCBI
Celera7128,863,838 - 128,872,961 (+)NCBICelera
Cytogenetic Map7q36NCBI
Atg101
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,436,895 - 2,446,849 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,436,974 - 2,446,849 (+)NCBIChiLan1.0ChiLan1.0
ATG101
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21042,118,333 - 42,126,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11242,115,096 - 42,123,381 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,685,897 - 36,693,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,462,533 - 37,470,277 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,462,533 - 37,470,062 (-)Ensemblpanpan1.1panPan2
ATG101
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,931,595 - 2,934,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,931,893 - 2,935,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,317,316 - 43,324,391 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,928,791 - 2,935,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,928,794 - 2,935,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,945,425 - 2,950,072 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,931,788 - 2,938,961 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,715,530 - 43,722,606 (+)NCBIUU_Cfam_GSD_1.0
Atg101
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,638,844 - 63,646,743 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,518,074 - 9,526,961 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,518,128 - 9,525,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG101
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,418,121 - 17,425,624 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1517,418,085 - 17,425,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATG101
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,243,200 - 48,251,129 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,243,216 - 48,251,371 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,841,049 - 197,849,553 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019791   ⟹   ENSHGLP00000019595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624816255,432 - 262,151 (-)Ensembl
RefSeq Acc Id: XM_004862912   ⟹   XP_004862969
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624816255,443 - 261,636 (-)NCBI
RefSeq Acc Id: XM_013079028   ⟹   XP_012934482
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624816255,443 - 261,636 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004862969 (Get FASTA)   NCBI Sequence Viewer  
  XP_012934482 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10054 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019595
GenBank Protein JAO00470 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004862969   ⟸   XM_004862912
- UniProtKB: G5BL93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012934482   ⟸   XM_013079028
- UniProtKB: G5BL93 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019595   ⟸   ENSHGLT00000019791


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014036 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019791 ENTREZGENE
InterPro ATG101 UniProtKB/TrEMBL
KEGG Report hgl:101707182 UniProtKB/TrEMBL
NCBI Gene Atg101 ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 101 UniProtKB/TrEMBL
  PTHR13292 UniProtKB/TrEMBL
Pfam ATG101 UniProtKB/TrEMBL
UniProt G5BL93 ENTREZGENE, UniProtKB/TrEMBL