Spata13 (spermatogenesis associated 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Spata13 (spermatogenesis associated 13) Heterocephalus glaber
Analyze
Symbol: Spata13
Name: spermatogenesis associated 13
RGD ID: 18915603
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell migration (ortholog); filopodium assembly (ortholog); lamellipodium assembly (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytosol (ortholog); filopodium (ortholog); lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Spata13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPATA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381323,979,802 - 24,307,069 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1323,979,805 - 24,307,074 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1323,979,810 - 24,035,027 (+)EnsemblGRCh38hg38GRCh38
GRCh371324,553,941 - 24,881,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361323,632,887 - 23,776,048 (+)NCBINCBI36Build 36hg18NCBI36
Build 341323,632,886 - 23,776,048NCBI
Celera135,797,087 - 5,943,877 (+)NCBICelera
Cytogenetic Map13q12.12NCBI
HuRef135,546,585 - 5,692,908 (+)NCBIHuRef
CHM1_11324,702,689 - 24,849,248 (+)NCBICHM1_1
T2T-CHM13v2.01323,186,689 - 23,514,163 (+)NCBIT2T-CHM13v2.0
Spata13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,722,617 - 61,002,005 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,871,450 - 61,002,005 (+)EnsemblGRCm39 Ensembl
GRCm381460,485,168 - 60,764,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,634,001 - 60,764,556 (+)EnsemblGRCm38mm10GRCm38
MGSCv371461,253,566 - 61,383,393 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,588,150 - 59,718,666 (+)NCBIMGSCv36mm8
Celera1458,411,392 - 58,543,017 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.77NCBI
Spata13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,954,585 - 39,083,752 (+)NCBIGRCr8
mRatBN7.21534,778,479 - 34,907,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,778,473 - 34,905,114 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1536,639,905 - 36,765,712 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,790,530 - 37,916,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,239,655 - 36,365,236 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,937,652 - 41,066,645 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,937,708 - 41,066,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01544,749,770 - 44,878,760 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41539,722,469 - 39,849,214 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11539,806,342 - 39,864,914 (+)NCBI
Celera1534,478,795 - 34,605,121 (+)NCBICelera
Cytogenetic Map15p12NCBI
Spata13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554974,224,374 - 4,307,335 (-)NCBIChiLan1.0ChiLan1.0
SPATA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21423,602,119 - 23,930,638 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11314,711,983 - 15,039,595 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,298,466 - 5,626,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11323,772,869 - 23,921,025 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1323,837,412 - 23,921,025 (+)Ensemblpanpan1.1panPan2
SPATA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,389,174 - 14,732,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,667,527 - 14,811,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02514,720,317 - 14,864,381 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,720,233 - 14,864,379 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,665,576 - 14,745,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,686,844 - 14,748,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,652,735 - 14,796,901 (+)NCBIUU_Cfam_GSD_1.0
Spata13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,635,240 - 116,957,681 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366881,433,231 - 1,569,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1112,806,674 - 3,161,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,160,029 - 2,281,822 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.133,767,078 - 4,085,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl33,932,482 - 4,085,375 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,409,981 - 40,742,603 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004854835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004854837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004854838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004854839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01054937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01054938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01054939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01054940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01054941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01054942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004854835   ⟹   XP_004854892
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_004854837   ⟹   XP_004854894
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,703,468 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_004854838   ⟹   XP_004854895
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,802,902 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_004854839   ⟹   XP_004854896
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,822,209 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236342   ⟹   XP_021092001
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236343   ⟹   XP_021092002
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,703,544 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236344   ⟹   XP_021092003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,712,242 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236345   ⟹   XP_021092004
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,703,540 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236346   ⟹   XP_021092005
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,704,068 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236347   ⟹   XP_021092006
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,703,451 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236348   ⟹   XP_021092007
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,796,262 - 13,852,924 (+)NCBI
RefSeq Acc Id: XM_021236349   ⟹   XP_021092008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,795,998 - 13,852,924 (+)NCBI
RefSeq Acc Id: XP_021092001   ⟸   XM_021236342
- Peptide Label: isoform X1
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854892   ⟸   XM_004854835
- Peptide Label: isoform X2
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092006   ⟸   XM_021236347
- Peptide Label: isoform X3
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854894   ⟸   XM_004854837
- Peptide Label: isoform X1
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092004   ⟸   XM_021236345
- Peptide Label: isoform X1
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092002   ⟸   XM_021236343
- Peptide Label: isoform X1
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092005   ⟸   XM_021236346
- Peptide Label: isoform X1
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092003   ⟸   XM_021236344
- Peptide Label: isoform X1
- UniProtKB: G5AMY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092008   ⟸   XM_021236349
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021092007   ⟸   XM_021236348
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004854895   ⟸   XM_004854838
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004854896   ⟸   XM_004854839
- Peptide Label: isoform X7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018983 ENTREZGENE
Ensembl Transcript ENSHGLT00000026918 ENTREZGENE
Gene3D-CATH Dbl homology (DH) domain UniProtKB/TrEMBL
  Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  GDS_CDC24_CS UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Spata13 ENTREZGENE
PANTHER RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 UniProtKB/TrEMBL
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9 UniProtKB/TrEMBL
Pfam RhoGEF UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
  SOS1_NGEF_PH UniProtKB/TrEMBL
PROSITE DH_1 UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP DBL homology domain (DH-domain) UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SH3-domain UniProtKB/TrEMBL
UniProt G5AMY4 ENTREZGENE, UniProtKB/TrEMBL