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Gene: Spata13 (spermatogenesis associated 13) Rattus norvegicus

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Symbol:

Spata13

Name:

spermatogenesis associated 13

RGD ID:

1307364

Description:

Predicted to enable guanyl-nucleotide exchange factor activity and identical protein binding activity. Predicted to be involved in cell migration; plasma membrane bounded cell projection assembly; and regulation of cell migration. Predicted to be located in several cellular components, including lamellipodium; podosome; and ruffle membrane. Predicted to be active in cytosol. Orthologous to human SPATA13 (spermatogenesis associated 13); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305938; spermatogenesis-associated protein 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPATA13 (spermatogenesis associated 13)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Spata13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spata13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPATA13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPATA13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spata13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPATA13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPATA13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spata13 (spermatogenesis associated 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SPATA13 (spermatogenesis associated 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPATA13 (spermatogenesis associated 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Spata13 (spermatogenesis associated 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spata13 (spermatogenesis associated 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RhoGEF3	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	spata13	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	spata13	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Allele / Splice:

Spata13^{Tn(sb-T2/Bart3)2.267Mcwi}

Genetic Models:

F344-Spata13^{Tn(sb-T2/Bart3)2.267Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	38,954,585 - 39,083,752 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	38,810,386 - 39,083,755 (+)	Ensembl				GRCr8
mRatBN7.2	15	34,778,479 - 34,907,645 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	34,778,473 - 34,905,114 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	36,639,905 - 36,765,712 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	37,790,530 - 37,916,332 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	36,239,655 - 36,365,236 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	40,937,652 - 41,066,645 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	40,937,708 - 41,066,769 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	44,749,770 - 44,878,760 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	39,722,469 - 39,849,214 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	34,478,795 - 34,605,121 (+)	NCBI		Celera
RGSC_v3.1	15	39,806,342 - 39,864,914 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

chlordecone (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenthion (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

hexadecanoic acid (ISO)

hydrogen cyanide (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

propiconazole (ISO)

raloxifene (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell migration (ISO)

filopodium assembly (IBA,ISO)

intracellular signal transduction (IEA)

lamellipodium assembly (IBA,ISO)

regulation of cell migration (ISO)

Cellular Component

cell projection (IEA)

cytoplasm (IEA,ISO)

cytosol (IBA,ISO)

filopodium (ISO)

lamellipodium (ISO)

membrane (IEA)

nucleoplasm (ISO)

plasma membrane (IEA)

podosome (ISO)

ruffle membrane (IEA,ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO)

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:17145773	PMID:17599059	PMID:19151759	PMID:19934221	PMID:25750125

Genomics

Comparative Map Data

Spata13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	38,954,585 - 39,083,752 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	38,810,386 - 39,083,755 (+)	Ensembl				GRCr8
mRatBN7.2	15	34,778,479 - 34,907,645 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	34,778,473 - 34,905,114 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	36,639,905 - 36,765,712 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	37,790,530 - 37,916,332 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	36,239,655 - 36,365,236 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	40,937,652 - 41,066,645 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	40,937,708 - 41,066,769 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	44,749,770 - 44,878,760 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	39,722,469 - 39,849,214 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	34,478,795 - 34,605,121 (+)	NCBI		Celera
RGSC_v3.1	15	39,806,342 - 39,864,914 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

SPATA13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	23,979,802 - 24,307,069 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	23,979,805 - 24,307,074 (+)	Ensembl			hg38	GRCh38
GRCh38.p14 Ensembl	13	23,979,810 - 24,035,027 (+)	Ensembl			hg38	GRCh38
GRCh37	13	24,553,941 - 24,881,207 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	23,632,887 - 23,776,048 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	23,632,886 - 23,776,048	NCBI
Celera	13	5,797,087 - 5,943,877 (+)	NCBI		Celera
Cytogenetic Map	13	q12.12	NCBI
HuRef	13	5,546,585 - 5,692,908 (+)	NCBI		HuRef
CHM1_1	13	24,702,689 - 24,849,248 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	23,186,689 - 23,514,163 (+)	NCBI		T2T-CHM13v2.0

Spata13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	60,722,617 - 61,002,005 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	60,871,450 - 61,002,005 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	60,485,168 - 60,764,556 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	60,634,001 - 60,764,556 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	61,253,566 - 61,383,393 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	59,588,150 - 59,718,666 (+)	NCBI		MGSCv36	mm8
Celera	14	58,411,392 - 58,543,017 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	31.77	NCBI

Spata13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955497	4,224,374 - 4,307,335 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPATA13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	23,602,119 - 23,930,638 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	14,711,983 - 15,039,595 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	5,298,466 - 5,626,162 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	23,772,869 - 23,921,025 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	23,837,412 - 23,921,025 (+)	Ensembl			panPan2	panpan1.1

SPATA13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	14,389,174 - 14,732,665 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	14,667,527 - 14,811,327 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	14,720,317 - 14,864,381 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	14,720,233 - 14,864,379 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	14,665,576 - 14,745,923 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	14,686,844 - 14,748,577 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	14,652,735 - 14,796,901 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spata13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	116,635,240 - 116,957,681 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936688	1,514,443 - 1,568,747 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936688	1,433,231 - 1,569,954 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	11	2,806,674 - 3,161,372 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	2,160,029 - 2,281,822 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	3,767,078 - 4,085,379 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	3,932,482 - 4,085,375 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	40,409,981 - 40,742,603 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624776	13,703,451 - 13,852,924 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Spata13
505 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	169
Count of miRNA genes:	138
Interacting mature miRNAs:	155
Transcripts:	ENSRNOT00000018407
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	20248600	37896129	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat

Markers in Region

D15Got33

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	38,979,629 - 38,979,746 (+)	Marker Load Pipeline
mRatBN7.2	15	34,803,505 - 34,803,622 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	40,962,709 - 40,962,825	NCBI	Rnor6.0
Rnor_5.0	15	44,774,824 - 44,774,940	UniSTS	Rnor5.0
RGSC_v3.4	15	39,748,613 - 39,748,730	RGD	RGSC3.4
RGSC_v3.4	15	39,748,614 - 39,748,730	UniSTS	RGSC3.4
Celera	15	34,504,124 - 34,504,240	UniSTS
RGSC_v3.1	15	39,764,314 - 39,764,430	RGD
RH 3.4 Map	15	226.2	RGD
RH 3.4 Map	15	226.2	UniSTS
RH 2.0 Map	15	123.9	RGD
Cytogenetic Map	15	p12	UniSTS

D15Mco14

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	39,051,963 - 39,052,139 (+)	Marker Load Pipeline
mRatBN7.2	15	34,875,844 - 34,876,020 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	41,035,266 - 41,035,441	NCBI	Rnor6.0
Rnor_5.0	15	44,847,381 - 44,847,556	UniSTS	Rnor5.0
RGSC_v3.4	15	39,820,949 - 39,821,125	RGD	RGSC3.4
RGSC_v3.4	15	39,820,950 - 39,821,125	UniSTS	RGSC3.4
Celera	15	34,576,404 - 34,576,567	UniSTS
RGSC_v3.1	15	39,836,649 - 39,836,825	RGD
Cytogenetic Map	15	p12	UniSTS

BE119336

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	34,852,330 - 34,852,514 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	41,011,678 - 41,011,861	NCBI	Rnor6.0
Rnor_5.0	15	44,823,793 - 44,823,976	UniSTS	Rnor5.0
RGSC_v3.4	15	39,797,436 - 39,797,619	UniSTS	RGSC3.4
Celera	15	34,552,982 - 34,553,165	UniSTS
RH 3.4 Map	15	227.7	UniSTS
Cytogenetic Map	15	p12	UniSTS

Genetic Models

This gene Spata13 is modified in the following models/strains:

F344-Spata13^{Tn(sb-T2/Bart3)2.267Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018407 ⟹ ENSRNOP00000018406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	38,954,658 - 39,083,754 (+)	Ensembl
mRatBN7.2 Ensembl	15	34,778,473 - 34,905,114 (+)	Ensembl
Rnor_6.0 Ensembl	15	40,937,708 - 41,066,769 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114572 ⟹ ENSRNOP00000090978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	38,810,386 - 39,083,754 (+)	Ensembl
mRatBN7.2 Ensembl	15	34,778,473 - 34,905,114 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115440 ⟹ ENSRNOP00000087721

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	39,053,261 - 39,083,755 (+)	Ensembl
mRatBN7.2 Ensembl	15	34,876,801 - 34,905,114 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126067 ⟹ ENSRNOP00000106141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	39,021,557 - 39,083,754 (+)	Ensembl

RefSeq Acc Id:

NM_001191686 ⟹ NP_001178615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	38,954,658 - 39,080,228 (+)	NCBI
mRatBN7.2	15	34,778,536 - 34,904,114 (+)	NCBI
Rnor_6.0	15	40,937,731 - 41,063,117 (+)	NCBI
Rnor_5.0	15	44,749,770 - 44,878,760 (+)	NCBI
Celera	15	34,478,795 - 34,605,121 (+)	NCBI

Sequence:

show sequence

GCCTGGCGAGCTCGCGGCTCGAACCCTGCTGGAGCCGGCTGGGGAGCAGGACCTCTTGGATACG
CTGGCTTTGGAGCTTCGGAAGTGCGGGAACCGCCGAGGCAGTAGCTGTGACTACGGATCCAGAT
GCACACAGCAGATGTGAGAGCCAGGCTGCTGTCCTTGGAGATGAAGGTTTGGAGCTGGGACCCC
CGGTTACCGGCGTCAATGGGGGTTTGAACCAGGCTGCCCACGCTAAGAACATGACAACAGCCCA
GGATGGCCATGGGCAAGGTGCCACAGCCACTTGTTCAGCCTCCAACCCGAAGGCCCCCAAAATG
GTGACGTCCTCAGCATGTCAGAATGGAGGCTGCAAAAGCAGCTCCAGTGATCCCGAAGCTGGGG
AAGCCAGGCTCAGTCCTTCCAAGCTGGTACGTCTCTTCTCTGGTAGTCGGAAGAGGATGAATTC
CAACTCTGAGAGACCTCGCTCGGTGGTTGTTGTGGGGAATTCCTCCACATGGAATGCCCTGGCC
TCCTTCCGTAAAATGGGCTCTTTTAAAAGATTGAAATCGTCCGTCCTTCAAGGAATTCAGAACC
GGGAGGGGGCGGAAGTTTCCAAGGAGGAGTCATCAGGAGACCAGGGAAGGGCTGCCCCCAATGG
CACCATTGCCATCCTGGGAAAGGGCCTGGGCAGGTGTGCATCCTTGGGCCCTGTGGGAGATGGG
GCCGGGTCTGACTGCTCTGACCCTGAGGACACAGAGGATGCCTTCCAGAGGAGCACGCATCGTT
CGCGCAGCATCCGCAGGGCCTATGGCCTGGGCCGCATCAGCCTGCTGGACCTGGGGCGGCAGTC
AGTGCCAGAGCCTGCGGTGTGTGAGATCCAAGTGCGCGACCCTGAGCCCAGCAGGGCCGTGCCT
CTGCCGCGCAGAAGCAAGAGCATCGACAGCTTGAGCGTCCTGAAGAGCTCCTTCAAGCGCAAGT
CTGCGTCCAACCTCACGGAACTGCAGGGTGACAGGCAGGTTCCCTCCAGGACCCTGAGCAGCTT
CTTTACAGACTCTGAGAAGCCGGGTGGCTCAGAGAGAAGAACCAGACGCTGGAGGAGCCCCATT
AGGGCCAAGGACTTCGACAGAGTCCTGAAACTGGTGAGCAATGTCAAGGAGGCGGCCTGGAAGA
GGGAGACCCCCAGGAGTGCAGCCCCTAGCCCTGGTTCCGGTCTGGGGGATGCGAACCCACTACT
TGCGCCAAGAAGCAAGCTACACGATGACTACTCGCGCCGTACCAGCAGCAGCGTGGAGCCAGAT
GCCAGGCGTGGTGGCCCTTTGTCCTCACCCTGTGCCTCTGCACCATGCACTGCTGCTCCCTACA
CAGCTCCAGAACCCCACCTTGATGTGGATACTGCAGTATTCCCCCTGGAAAGTAAAAGTGCTCA
GCCACTGGGAACTGATGGACCTCACACCAGCAGCTCCTCACCAATCCCCACAGACACAGAAGGG
TTGAGCCAGGCCTCCAGTGAGGCACATACTGGCAGCCAGCATCCCTTTGACCCCGTGCAGCTTC
CCACTCCTCTGAGGCCCACCACACCCAAGCCCCAAAGCCCACAGAGCCCAGGGAGTACTAAGTG
CCCCAGCAGTCTAAGTGTACTGTCCCTCAGTTCGGCGGACAGTGAAGAACGGTCGGAGGATGCC
GTGCACAGGCAGGCAGGACCCATGTCCCTCCAGGATGCCGTTCCCGCCGCTGCTGGTGATGTTG
GGGGAGAAAACAGTGAGAGCTCTTTTCCCTCGAATCCTGACGGAGCCACCAGTCCAGAAGAGAG
GAAGGAGGAGGTAAGGGTGGTGACTGAGGATGACTGGCGGCAGGGCTCAGCCCTGGAGGAGGAG
CAGAATGAGGCACCTCGAATCTCCAGGAGGAAGTGGGGCTCCGGGAGGCGCACCGGGCCACGAC
CGCTGTCTGACTATGGCCAGCTGGCCAGCAGAAGCTTGTCCATTCCCGAAGATGCCATTGCAAC
AGATCCTCCAGGTGAAGACCGCGTGGACAGGATGCACCCAGCAAGTGTGACCACCACCAGCCAG
GATCCATGCACCTCCTCAGGCTGTCCCAGGGGAGGCCGGAGAAGGCGACCTATATCTGTGATCG
GAGGGGTCAGCTTCTATGGCAACACCCAGGCAGAGGATGTGGAGAACCTCTTGGTCCAACCAGC
AGCCAGGCCTCCTGTGCCTGCACACCAAGTTCCACCCTACAAGGCTGTGTCTGCCCGCCTCCGG
CCCTTCACCTTCTCCCAGAGCACTCCCATCGGGCTGGACCGTGTGGGGCGTCGACGGCAGATGA
AAACATCCAATGTCTCTTCGGATGGAGGTGCGGAGTCCTCGGCCTTAGTGGATGACAATGGTAG
TGAGGAAGACTTCAGCTATGAGGAGCTCTGCCAGGCCAACCCTCGATACCTCCAGCCGGGCGGG
GAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGCGTGGTCTGTGCAGAAGCACTGTGGG
ACCATGTGACCATGGATGACCAGGAACTAGGCTTCAAGGCCGGAGATGTCATCCAGGTCCTGGA
AGCCTCCAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTCCCTGCCAGC
TTTGTTAGGCTTCGAGTCAACCAGGAGGAGCTGCCCGAGCCCTGCAGCAGCTCCCAGGGGGAGG
AGCAGGACGAGGACGCCAGCAAAGCCCGCCACAAGCACCCCGAGAGCCAGCAGCAGATGCGGAC
CAACGTCATCCAGGAGATCATGAACACCGAGCGAGTGTACATCAAGCACCTCAAGGACATCTGC
GAGGGCTACATCCGACAGTGTCGTAAGCACACGGGAATGTTCACCGTTGGGCAGCTAGCCACTA
TTTTCGGAAACATTGAAGACATTTACAAATTCCAAAGGAAGTTTCTGAAAGACCTCGAGAAACA
GTACAACAAAGAAGAACCTCACTTAAGTGAGATAGGATCCTGCTTTCTTCAGCACCAAGAGGGC
TTTGCCATCTACTCTGAGTACTGTAACAACCACCCAGGAGCCTGTGTGGAGTTGTCCAACCTCA
TGAAGCAGAGCAAGTACCGGCACTTCTTTGAGGCCTGCCGCCTGCTCCAGCAGATGATCGATAT
AGCCCTGGATGGCTTCCTCCTCACACCGGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCT
GAGCTGCTCAAGTACACCACCCAGGAGCACAGCGACTACAACAATATAAAGGCGGCCTATGAAG
CCATGAAGAATGTGGCCTGCTTGATCAATGAACGCAAGCGTAAGCTAGAGAGCATCGACAAGAT
CGCCCGCTGGCAGGTGTCCATCGTGGGCTGGGAGGGCCTGGACATTCTGGACCGAAGCTCCGAG
CTGATTCACTCCGGAGAGCTAACCAAGATCACCAGGCAGGGCAAGACCCAGCAGCGAGTCTTCT
TCCTGTTCGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTATACTA
CAAGGGCCGCATGGACATGGATGAGGTGGACATTGTGGATGTGGAGGATGGGCGGGACAAGGAC
TGGAACCTCAGCATGCGAAACGCCTTCAAGTTGGTCAGCAAAGCCACGGATGAGGTTCACCTGT
TCTGCGCCAGAAAGCAGGAGGACAAGGCCAGGTGGCTGCAGGCCTATGCGGACGAGAGGCGGCG
GGTGCAGGAAGACCAGCAGATGGGAATGGAAATCTCAGAAAATCAGAAGAAACTCGCCATGTTG
AACGCCCAGAAGGCAGGACATGGGAAATCTAAAGGCTACAACAGCTGCCCTGTGGCCCCACCCC
ACCAGAGCCTGCCACCCCTCCACCAGCGCCACATCACTGTGCCTACCAGCATCCCGCAGCAGCA
GGTCTTCGCCTTGGCTGAGCCCAAGAGGAAGCCATCGCTGTTCTGGCACACCTTCCACAAACTC
ACCCCATTCCGGAAGTGA

hide sequence

RefSeq Acc Id:

XM_006252113 ⟹ XP_006252175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	38,954,585 - 39,083,752 (+)	NCBI
mRatBN7.2	15	34,778,479 - 34,907,645 (+)	NCBI
Rnor_6.0	15	40,937,652 - 41,066,645 (+)	NCBI
Rnor_5.0	15	44,749,770 - 44,878,760 (+)	NCBI

Sequence:

show sequence

CGTGGCCGTGGGAGGAGGCGTCTGAGCGCGGGAGGGCGGAATCAGCGCTGCTCTTTCTGTGGAG
GCCACGGCGCGCAGAGCCTGGCGAGCTCGCGGCTCGAACCCTGCTGGAGCCGGCTGGGGAGCAG
GACCTCTTGGATACGCTGGCTTTGGAGCTTCGGAAGTGCGGGAACCGCCGAGGCAGTAGCTGTG
ACTACGGATCCAGATGCACACAGCAGATGTGAGAGCCAGGCTGCTGTCCTTGGAGATGAAGGTT
TGGAGCTGGGACCCCCGGTTACCGGCGTCAATGGGGGTTTGAACCAGGCTGCCCACGCTAAGAA
CATGACAACAGCCCAGGATGGCCATGGGCAAGGTGCCACAGCCACTTGTTCAGCCTCCAACCCG
AAGGCCCCCAAAATGGTGACGTCCTCAGCATGTCAGAATGGAGGCTGCAAAAGCAGCTCCAGTG
ATCCCGAAGCTGGGGAAGCCAGGCTCAGTCCTTCCAAGCTGGTACGTCTCTTCTCTGGTAGTCG
GAAGAGGATGAATTCCAACTCTGAGAGACCTCGCTCGGTGGTTGTTGTGGGGAATTCCTCCACA
TGGAATGCCCTGGCCTCCTTCCGTAAAATGGGCTCTTTTAAAAGATTGAAATCGTCCGTCCTTC
AAGGAATTCAGAACCGGGAGGGGGCGGAAGTTTCCAAGGAGGAGTCATCAGGAGACCAGGGAAG
GGCTGCCCCCAATGGCACCATTGCCATCCTGGGAAAGGGCCTGGGCAGGTGTGCATCCTTGGGC
CCTGTGGGAGATGGGGCCGGGTCTGACTGCTCTGACCCTGAGGACACAGAGGATGCCTTCCAGA
GGAGCACGCATCGTTCGCGCAGCATCCGCAGGGCCTATGGCCTGGGCCGCATCAGCCTGCTGGA
CCTGGGGCGGCAGTCAGTGCCAGAGCCTGCGGTGTGTGAGATCCAAGTGCGCGACCCTGAGCCC
AGCAGGGCCGTGCCTCTGCCGCGCAGAAGCAAGAGCATCGACAGCTTGAGCGTCCTGAAGAGCT
CCTTCAAGCGCAAGTCTGCGTCCAACCTCACGGAACTGCAGGGTGACAGGCAGGTTCCCTCCAG
GACCCTGAGCAGCTTCTTTACAGACTCTGAGAAGCCGGGTGGCTCAGAGAGAAGAACCAGACGC
TGGAGGAGCCCCATTAGGGCCAAGGACTTCGACAGAGTCCTGAAACTGGTGAGCAATGTCAAGG
AGGCGGCCTGGAAGAGGGAGACCCCCAGGAGTGCAGCCCCTAGCCCTGGTTCCGGTCTGGGGGA
TGCGAACCCACTACTTGCGCCAAGAAGCAAGCTACACGATGACTACTCGCGCCGTACCAGCAGC
AGCGTGGAGCCAGATGCCAGGCGTGGTGGCCCTTTGTCCTCACCCTGTGCCTCTGCACCATGCA
CTGCTGCTCCCTACACAGCTCCAGAACCCCACCTTGATGTGGATACTGCAGTATTCCCCCTGGA
AAGTAAAAGTGCTCAGCCACTGGGAACTGATGGACCTCACACCAGCAGCTCCTCACCAATCCCC
ACAGACACAGAAGGGTTGAGCCAGGCCTCCAGTGAGGCACATACTGGCAGCCAGCATCCCTTTG
ACCCCGTGCAGCTTCCCACTCCTCTGAGGCCCACCACACCCAAGCCCCAAAGCCCACAGAGCCC
AGGGAGTACTAAGTGCCCCAGCAGTCTAAGTGTACTGTCCCTCAGTTCGGCGGACAGTGAAGAA
CGGTCGGAGGATGCCGTGCACAGGCAGGCAGGACCCATGTCCCTCCAGGATGCCGTTCCCGCCG
CTGCTGGTGATGTTGGGGGAGAAAACAGTGAGAGCTCTTTTCCCTCGAATCCTGACGGAGCCAC
CAGTCCAGAAGAGAGGAAGGAGGAGGTGGTGACTGAGGATGACTGGCGGCAGGGCTCAGCCCTG
GAGGAGGAGCAGAATGAGGCACCTCGAATCTCCAGGAGGAAGTGGGGCTCCGGGAGGCGCACCG
GGCCACGACCGCTGTCTGACTATGGCCAGCTGGCCAGCAGAAGCTTGTCCATTCCCGAAGATGC
CATTGCAACAGATCCTCCAGGTGAAGACCGCGTGGACAGGATGCACCCAGCAAGTGTGACCACC
ACCAGCCAGGATCCATGCACCTCCTCAGGCTGTCCCAGGGGAGGCCGGAGAAGGCGACCTATAT
CTGTGATCGGAGGGGTCAGCTTCTATGGCAACACCCAGGCAGAGGATGTGGAGAACCTCTTGGT
CCAACCAGCAGCCAGGCCTCCTGTGCCTGCACACCAAGTTCCACCCTACAAGGCTGTGTCTGCC
CGCCTCCGGCCCTTCACCTTCTCCCAGAGCACTCCCATCGGGCTGGACCGTGTGGGGCGTCGAC
GGCAGATGAAAACATCCAATGTCTCTTCGGATGGAGGTGCGGAGTCCTCGGCCTTAGTGGATGA
CAATGGTAGTGAGGAAGACTTCAGCTATGAGGAGCTCTGCCAGGCCAACCCTCGATACCTCCAG
CCGGGCGGGGAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGCGTGGTCTGTGCAGAAG
CACTGTGGGACCATGTGACCATGGATGACCAGGAACTAGGCTTCAAGGCCGGAGATGTCATCCA
GGTCCTGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTC
CCTGCCAGCTTTGTTAGGCTTCGAGTCAACCAGGAGGAGCTGCCCGAGCCCTGCAGCAGCTCCC
AGGGGGAGGAGCAGGACGAGGACGCCAGCAAAGCCCGCCACAAGCACCCCGAGAGCCAGCAGCA
GATGCGGACCAACGTCATCCAGGAGATCATGAACACCGAGCGAGTGTACATCAAGCACCTCAAG
GACATCTGCGAGGGCTACATCCGACAGTGTCGTAAGCACACGGGAATGTTCACCGTTGGGCAGC
TAGCCACTATTTTCGGAAACATTGAAGACATTTACAAATTCCAAAGGAAGTTTCTGAAAGACCT
CGAGAAACAGTACAACAAAGAAGAACCTCACTTAAGTGAGATAGGATCCTGCTTTCTTCAGCAC
CAAGAGGGCTTTGCCATCTACTCTGAGTACTGTAACAACCACCCAGGAGCCTGTGTGGAGTTGT
CCAACCTCATGAAGCAGAGCAAGTACCGGCACTTCTTTGAGGCCTGCCGCCTGCTCCAGCAGAT
GATCGATATAGCCCTGGATGGCTTCCTCCTCACACCGGTGCAGAAGATCTGCAAATACCCGCTG
CAGCTGGCTGAGCTGCTCAAGTACACCACCCAGGAGCACAGCGACTACAACAATATAAAGGCGG
CCTATGAAGCCATGAAGAATGTGGCCTGCTTGATCAATGAACGCAAGCGTAAGCTAGAGAGCAT
CGACAAGATCGCCCGCTGGCAGGTGTCCATCGTGGGCTGGGAGGGCCTGGACATTCTGGACCGA
AGCTCCGAGCTGATTCACTCCGGAGAGCTAACCAAGATCACCAGGCAGGGCAAGACCCAGCAGC
GAGTCTTCTTCCTGTTCGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACAT
GCTATACTACAAGGGCCGCATGGACATGGATGAGGTGGACATTGTGGATGTGGAGGATGGGCGG
GACAAGGACTGGAACCTCAGCATGCGAAACGCCTTCAAGTTGGTCAGCAAAGCCACGGATGAGG
TTCACCTGTTCTGCGCCAGAAAGCAGGAGGACAAGGCCAGGTGGCTGCAGGCCTATGCGGACGA
GAGGCGGCGGGTGCAGGAAGACCAGCAGATGGGAATGGAAATCTCAGAAAATCAGAAGAAACTC
GCCATGTTGAACGCCCAGAAGGCAGGACATGGGAAATCTAAAGGCTACAACAGCTGCCCTGTGG
CCCCACCCCACCAGAGCCTGCCACCCCTCCACCAGCGCCACATCACTGTGCCTACCAGCATCCC
GCAGCAGCAGGTCTTCGCCTTGGCTGAGCCCAAGAGGAAGCCATCGCTGTTCTGGCACACCTTC
CACAAACTCACCCCATTCCGGAAGTGAGCCTACCCAGGGGGCACCTCTGAGGTACTGTGAGGAG
GAAGACCAGTTTTGTCTCTTCAGCGTGATGTCCAGGGATGGCTTCTTGCTCAGTGCTGAACACT
TCATTTGGGGATCGATGAAGGGGAAAAGAAGTTGGACTCAGCTTTGACCTTGAGAGGCCCCGGC
ACCCTTGTGGAAGGGAGGAGGCCATGAAGCACTGCTCTGTCCCACACTGGAAGCCATACTCTCC
GATGGCCATGATATAGGGACCAGGGCCTCTCTGCATGGAGACTGCTGACTCAGTTATCCCCTGT
GAGTTTCCCACTGACAGTCACACTCCTGCTGCAGTTCCAGACGGTATCAGGAGCCTTTCAGTGC
CTCAGGAGCAACTACATTAAGGACGGCTTCTGTGTTTGATCTTAAGAAGCTCACTGACCAGTTG
GTAGGATGTTGGCAGCCATGGGATAACCTGGGGTCAGATCAGGCCCAGAAGAGACCAGGAAGGA
GCTAGAGCCAATGGGGCAGGTGCCTACAGTTCTCTAAGGTGTAGCAGATGCCAGGCTAGAGTGT
AGGTCTCACCCTGCGAGGTTCCTTATTCACAAGAGAGTCAGGAGGGAAGGCTGCTGCCACCTGA
CTTGTCCCTCCCACCTCTTCAAACAGAGGTGACGCCTTGCTCACCCCTCACTACCTAAGAACCT
GCCACTCTCGGAAGTAAGGGTGACATGAACCGTTTAACTTTGGTAACCTGTGCAGCAGCAGCAG
CCATTTGCATCACCAGTGGGATGATGAGGACACTGGCATCCACAGAGAAAACAAGGGGCGAAAC
TGTCCTGCTTCTTGGGGAAATGGAAACACCTCTGTCACACGACCCCAAAACAGTAGTACTGGAG
GCTATGCCAGCTGGGGAATAGTCTTGATGGCTCCTTAGCTCTGAGAGAGCTGTCTCTTAAAGAG
GACTACACAAACTGACACCCACAGAGAGGAACCTTTCTCTGTTGACACTGACTTGATGGAAATG
CCTTTCCACTGATCTGAGGGAGACTGGCTCTGCATTTTAATCTACATAGTGGGCTGGTCAGGAG
AGATCCTGCCGTGCAGCTCATGCGTTCCTTTTAGACAAACGTGTTCTTGTGTGCTGTTCTTGCA
AGGTCCTCACCTCTCATCAGCTCTCCATTGAGACCAAACAAGTCTGCAGTGTTAGAGGTAAAGG
TATTGGTCAGTCATTGCACAGTTCACCTTGTCTCCATATCTATGCCTGGAAAACAAATGACGTC
ACAGCAAATAACCTTGATCCTGGACTTCAGCCCTGCTGTGCACCCTGGCATGGTCATAGGCAGC
ACTGCTAAGGACAGTAGTCGGTGGCCCCATAGCTGTGTCTGTGTGCTACAAAGTGGTTTAAGTG
CACAGAGCATGCGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGACCTCAACTTCAACTGACAGGGAGAGAGAGAGACAGAGAGAGAG
ACAGAGAGAGAGAGAGAGAGAGAGAGCGCTCAACTTCAACTGACAGGTTTGATTGGTTGGTTTG
TGTTTGATTGTTTTTTTGTTTATTTGTTTATTCTCTAATAGAATGTAATTATATTTTAGAAACC
ACGCTAGTGTACTTTTCTCTGCTCCAGTGTGTACATGCAGCAGTTCCCACAGATGTGTTGTTAA
TATGAAAATTGCTTTAAAGATGTGAGTAGCCACTGGTCCTGTTCATTTTCACTGAGGATTCCTC
TTGAGTCAGAGCCTTGCTGCAGGCTCCGTTTGCTGTTACGGCTGACGACAGTGAAGAAGTAATA
GCTTATGTTTGTGACCCATCCTAATATATTTCCCAGCTGCCCTAACTTCCAGTTCCCACCTACC
TCCACAGACCTCCTAACAATCCCGGACATCAGGAAGTGTTTATATCGAGTCACATTCAAGACCT
GGGCTGGCCCCAGGCGATTTTATACAGCACAAGAAGTGCTTGATCAAATGTCTGTCCCAGGTGA
CTCTTACTTGGGATTTCTGGGTGATTTTGAAAACTAATGTGTTTTTTAAAGATATAATAATAGT
CTTTGACTTTGTAAAAAAAATCTATCTGTATAGCATTTTATTACCAAATACAGAAAGTGGAGGA
CCTTCAGCAGTTTTTCATTTCAGTTCACCAAACTCCCTTCTTGCTTTAAGGCATGTGCTCTACT
TTGGAAGGAAACAGAAACAACACAGAGCCTCCTGCCTGAATGGTGTCTGCCGCTCACGAACAAC
CTTCCCTCCCTCTCTCTCAATGGGCCAAAAATTATTGGTGATCTAAATTTTGGATGAATTTCGT
TTGTCCTATTTTTAACATTCCACCATTTGCTGGCTCTGTTAACGTGATGGAGAGTGTACCTGGT
TTAGATTGTACCTATAACATGTAGGCGCCATGTGGTAGGTGAAAACTGATCACAACACTTGACA
GCCTAGAGAAAGAAAGAAAGTTCCAGGCTCTGTCCCCAAAAGGAAAGGAGAATGGCATGCAGCT
AATCGGACGCTTAAGAGCCCTCGCTGCCGCCCCCACCTGTTCTGATCTTCCTTGCTGCATGGTA
GATCGGCCTGTGCAGGTGAGAACCGGCCACCATCTGGCATGCCATTTCTACCCACCGTGCCTTT
TACCATCCAATCTATTGAAGACGGATTCCGAATCCTACATTGCTGTTGTTACATGCAAAGCAAA
AAGAACGTATTTAATTTGAAACCTGGTTCAAAGCTCAAGTATGGTGTTTTGTTTTGTTTTTTAA
GCGCCAGTGCTCCAGCATCGCATGCATGTGGAGATCTGTAACTGGATTGCTGGTGTTTCTTAGG
ACAAGTCAGTCCTGCTTCCCAGCCAGAGTTTCCTGGAGCCAGGGCATGGCTTCTGCATGATGGC
TTCATCACTAATAGGAAAAGCAGAAGTGTCCTCAGGCCAGTGCCAAGAAGTATAAGTCAATGTC
TTTCAGCAGCTGACAGACAGGATGTTGGGCACAGTGTGCCCACACATTGTTTCTTCTCAGGATC
CAGGGAAAGGGGCGTTTGAAAGATTTAGGACAAAGTAGGTAGAAACTTGTAGCCAGTCTTAGAG
AGGGGAGAGAGAAACACCAGCTTGTATAATGTATGTAAGTTTGCTTAGCCACCTCGTGCACCCC
ATTATTGCCTTTACTGTTCTCCTAGGCATTGCCAATATAGAAAGTACTTTGAGCCGCTTCTGTT
ATATTTGGGATACTTACTGGTACCCACTGTGCGTGACTTGCCGATCTAGGCTGTGCTTTTGGTG
ATAACTAACCCATGCCGCGGTGCCATCGTCCGTGTAAGTCAAAGGCTGCTGTAGAGCCTGTGAG
CTGGCTTTGACACTGAAACAGGACCTGTGTGCTAGATGTGCATTTTTGCTGAATGAAGGGTTTG
TTCGTATTATTTTTAATACTATTGTTTGATTTCTTGTAAATGCTGTGAATCTCTATTTGTCATT
TTGTATCTGTATATTAAAATTAATTTGCCAAGCTG

hide sequence

RefSeq Acc Id:

XM_006252114 ⟹ XP_006252176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	39,010,820 - 39,083,752 (+)	NCBI
mRatBN7.2	15	34,844,156 - 34,907,645 (+)	NCBI
Rnor_6.0	15	41,002,904 - 41,066,645 (+)	NCBI
Rnor_5.0	15	44,749,770 - 44,878,760 (+)	NCBI

Sequence:

show sequence

GAAGGGAAGAGTATTTGCTATGTTGCTCAGGCTGGTCTCAAGCTCTGGATTCAGGTGTCCTTCC
TACCCCAGCCTCTGGACTAACTGGGACCACTTTTGAATACTCCAGACCCACAGACCTGGACTTA
GCCTAAGATATATTTCATTTTTCATCCTTGAATCTTTTTTTTAAAAAAATAAGTTATTTATTTA
CTTTGCAGCAAATGGATGGGAATTAAATTTTGATCATTGAATGAAGTTACTATCTTCTCTTCCC
AATCTGGGGAACCAAATTAAAGGCCAATCCAAAAGCCATGGCCCTTCCCCAGTGTATCATATTA
ATGTTAGGAGTAGCAGTAATAAACCTTCTAGTACCCATTATTAATAAACTCTTAACCACTCTAG
CATTTATGAGAGACTAGTATTTGAGTGCTTTGTTTATCACATGCCAGACCCTCAGCACTGAAGA
GAATATAAGATAGTCACATTAATGTGACCCGGCGTCATAGTATTTTGACAGTTTTCTCTCAGTT
AGTGACTTGTTTAATTTGGGGCTAGAAAATCATAATAAGCCTTGACTGAAGTCCTAAAATAAGA
AGAGTCAGTTTCAGTATTCTTTCCTAAGAGAAATTCTGGCTGCTGGCTAAGAAATGTTTTAGCC
TGTATGTTTTTGTTGCCAACTTTCTCTTTCTAAGTTTTTCCTGTGTTAAGATCAGATTGGAGAT
TCCTTTCTGGCTGGCAGGGTGACAGAGATGCCATCTGCCTACGTCTGCTGATCTTATCAGACAA
TATCAGACAGTTTATTAGTTTGTTGTATGGGGGGGGTCCTCCTGAGTAGCCCAGGTTGGCCTTG
TCTTCTCTGTCTTCCTGTCTGTACCTGATGGGTCATAAGTCCTACTGCAGTCTCTGCACTTTCT
TTGAACTCTGAAAAACTCACTCATCGGCGATCTTAGGAGCTCCTCCTTAATATCCTAGGATATA
TATGTAAAACTCACACAAATGCACATCAATGCCATGTTGCTCAGGCTGGCTTCAAACTTCTTGT
TGATTGCAACGACGACCAACCATCCCACGAGTCTGGAAGCCACAAGTTCAAAGTCACAGTGTGT
CAGAATCCAGTCTCTGTGAGGCTCGCCCTTCTCCAGCCTCTGGTAGAAGTGACAATCATCAGGC
TTGTTACTGCGTCACTCCCTGTCTGGGGATAGAACTCAGTTCTTAGAACACCTGCCTAGCACTA
TGTAACCCCCCAAATTGGGAAGTGGAGGCAGAAATATCAAAGTTCAAGATCATCTTCAGCTACA
GGTCAAGACTGAAGCTGACGTGGGCTACATAAAACCCTGCATCCAGATAGATAAATCAGCACCA
GTGTCTATTCCATCCATGAGTAGCCTGCTTCCTTTGTGTGTGTATCCAAATTCTCCTTAGGGTA
TAAAGTCAACAGCCACTGGTTTAGAGCCCACCTAATCCAGGGAGAGCCCATTCAAAAGTGATCA
CTCTCCAAAGCACACTGGCAGGCACTTGGAGTGGCTAGACCATCCGTCTGGGGACACTCACCAG
CTAACCCTGTGCACACTTACTGCCCCTGAAGACATGCTATCACACCAGGTGCCTTTAAGCATTT
ATTTTTAACCTCCAGTTAAATAATTCGTAGAAATTCCTTTTGCAGAAATGTTTCAAGGAAGCAG
TTTATATTAGTTTGTGTAGTCTTTTATTTTTGGAGCTGAAAAAAAAAAAAAGAAGTCCTGTATA
GGAAGAAGATACTGCTCACTAACTAACCAGGAAAGCCACTTTAGAATAGTTACGCAAAGCAGGA
GTTAAAAGGGCAGTCCCCAGAGTGCAAGGTCTGTTTACAAAGGTTTATGACTTGGGTGTGACTT
GGTGGTTCAAGCTTCAGGGACTTGGAGACTCGTGAGTTGAGCCTGCTGGACTGGACCAGGCAGA
GGTCTGCATGACCGTGTAGAGCCCTGATCACAGATTTTAGAAGACCTGAACTCTGGGACGCATG
GATGTGGTCAACTGCCTGTTCCTCCAGTGTGTCTGTGGGCCGCCCCTGCCCATTGCTAGATCTC
AGGTGGTGACTGAGGATGACTGGCGGCAGGGCTCAGCCCTGGAGGAGGAGCAGAATGAGGCACC
TCGAATCTCCAGGAGGAAGTGGGGCTCCGGGAGGCGCACCGGGCCACGACCGCTGTCTGACTAT
GGCCAGCTGGCCAGCAGAAGCTTGTCCATTCCCGAAGATGCCATTGCAACAGATCCTCCAGGTG
AAGACCGCGTGGACAGGATGCACCCAGCAAGTGTGACCACCACCAGCCAGGATCCATGCACCTC
CTCAGGCTGTCCCAGGGGAGGCCGGAGAAGGCGACCTATATCTGTGATCGGAGGGGTCAGCTTC
TATGGCAACACCCAGGCAGAGGATGTGGAGAACCTCTTGGTCCAACCAGCAGCCAGGCCTCCTG
TGCCTGCACACCAAGTTCCACCCTACAAGGCTGTGTCTGCCCGCCTCCGGCCCTTCACCTTCTC
CCAGAGCACTCCCATCGGGCTGGACCGTGTGGGGCGTCGACGGCAGATGAAAACATCCAATGTC
TCTTCGGATGGAGGTGCGGAGTCCTCGGCCTTAGTGGATGACAATGGTAGTGAGGAAGACTTCA
GCTATGAGGAGCTCTGCCAGGCCAACCCTCGATACCTCCAGCCGGGCGGGGAACAGCTGGCCAT
CAATGAGCTCATCAGCGATGGCAGCGTGGTCTGTGCAGAAGCACTGTGGGACCATGTGACCATG
GATGACCAGGAACTAGGCTTCAAGGCCGGAGATGTCATCCAGGTCCTGGAAGCCTCCAACAAGG
ACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTCCCTGCCAGCTTTGTTAGGCTTCG
AGTCAACCAGGAGGAGCTGCCCGAGCCCTGCAGCAGCTCCCAGGGGGAGGAGCAGGACGAGGAC
GCCAGCAAAGCCCGCCACAAGCACCCCGAGAGCCAGCAGCAGATGCGGACCAACGTCATCCAGG
AGATCATGAACACCGAGCGAGTGTACATCAAGCACCTCAAGGACATCTGCGAGGGCTACATCCG
ACAGTGTCGTAAGCACACGGGAATGTTCACCGTTGGGCAGCTAGCCACTATTTTCGGAAACATT
GAAGACATTTACAAATTCCAAAGGAAGTTTCTGAAAGACCTCGAGAAACAGTACAACAAAGAAG
AACCTCACTTAAGTGAGATAGGATCCTGCTTTCTTCAGCACCAAGAGGGCTTTGCCATCTACTC
TGAGTACTGTAACAACCACCCAGGAGCCTGTGTGGAGTTGTCCAACCTCATGAAGCAGAGCAAG
TACCGGCACTTCTTTGAGGCCTGCCGCCTGCTCCAGCAGATGATCGATATAGCCCTGGATGGCT
TCCTCCTCACACCGGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCTGAGCTGCTCAAGTA
CACCACCCAGGAGCACAGCGACTACAACAATATAAAGGCGGCCTATGAAGCCATGAAGAATGTG
GCCTGCTTGATCAATGAACGCAAGCGTAAGCTAGAGAGCATCGACAAGATCGCCCGCTGGCAGG
TGTCCATCGTGGGCTGGGAGGGCCTGGACATTCTGGACCGAAGCTCCGAGCTGATTCACTCCGG
AGAGCTAACCAAGATCACCAGGCAGGGCAAGACCCAGCAGCGAGTCTTCTTCCTGTTCGACCAC
CAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTATACTACAAGGGCCGCATGG
ACATGGATGAGGTGGACATTGTGGATGTGGAGGATGGGCGGGACAAGGACTGGAACCTCAGCAT
GCGAAACGCCTTCAAGTTGGTCAGCAAAGCCACGGATGAGGTTCACCTGTTCTGCGCCAGAAAG
CAGGAGGACAAGGCCAGGTGGCTGCAGGCCTATGCGGACGAGAGGCGGCGGGTGCAGGAAGACC
AGCAGATGGGAATGGAAATCTCAGAAAATCAGAAGAAACTCGCCATGTTGAACGCCCAGAAGGC
AGGACATGGGAAATCTAAAGGCTACAACAGCTGCCCTGTGGCCCCACCCCACCAGAGCCTGCCA
CCCCTCCACCAGCGCCACATCACTGTGCCTACCAGCATCCCGCAGCAGCAGGTCTTCGCCTTGG
CTGAGCCCAAGAGGAAGCCATCGCTGTTCTGGCACACCTTCCACAAACTCACCCCATTCCGGAA
GTGAGCCTACCCAGGGGGCACCTCTGAGGTACTGTGAGGAGGAAGACCAGTTTTGTCTCTTCAG
CGTGATGTCCAGGGATGGCTTCTTGCTCAGTGCTGAACACTTCATTTGGGGATCGATGAAGGGG
AAAAGAAGTTGGACTCAGCTTTGACCTTGAGAGGCCCCGGCACCCTTGTGGAAGGGAGGAGGCC
ATGAAGCACTGCTCTGTCCCACACTGGAAGCCATACTCTCCGATGGCCATGATATAGGGACCAG
GGCCTCTCTGCATGGAGACTGCTGACTCAGTTATCCCCTGTGAGTTTCCCACTGACAGTCACAC
TCCTGCTGCAGTTCCAGACGGTATCAGGAGCCTTTCAGTGCCTCAGGAGCAACTACATTAAGGA
CGGCTTCTGTGTTTGATCTTAAGAAGCTCACTGACCAGTTGGTAGGATGTTGGCAGCCATGGGA
TAACCTGGGGTCAGATCAGGCCCAGAAGAGACCAGGAAGGAGCTAGAGCCAATGGGGCAGGTGC
CTACAGTTCTCTAAGGTGTAGCAGATGCCAGGCTAGAGTGTAGGTCTCACCCTGCGAGGTTCCT
TATTCACAAGAGAGTCAGGAGGGAAGGCTGCTGCCACCTGACTTGTCCCTCCCACCTCTTCAAA
CAGAGGTGACGCCTTGCTCACCCCTCACTACCTAAGAACCTGCCACTCTCGGAAGTAAGGGTGA
CATGAACCGTTTAACTTTGGTAACCTGTGCAGCAGCAGCAGCCATTTGCATCACCAGTGGGATG
ATGAGGACACTGGCATCCACAGAGAAAACAAGGGGCGAAACTGTCCTGCTTCTTGGGGAAATGG
AAACACCTCTGTCACACGACCCCAAAACAGTAGTACTGGAGGCTATGCCAGCTGGGGAATAGTC
TTGATGGCTCCTTAGCTCTGAGAGAGCTGTCTCTTAAAGAGGACTACACAAACTGACACCCACA
GAGAGGAACCTTTCTCTGTTGACACTGACTTGATGGAAATGCCTTTCCACTGATCTGAGGGAGA
CTGGCTCTGCATTTTAATCTACATAGTGGGCTGGTCAGGAGAGATCCTGCCGTGCAGCTCATGC
GTTCCTTTTAGACAAACGTGTTCTTGTGTGCTGTTCTTGCAAGGTCCTCACCTCTCATCAGCTC
TCCATTGAGACCAAACAAGTCTGCAGTGTTAGAGGTAAAGGTATTGGTCAGTCATTGCACAGTT
CACCTTGTCTCCATATCTATGCCTGGAAAACAAATGACGTCACAGCAAATAACCTTGATCCTGG
ACTTCAGCCCTGCTGTGCACCCTGGCATGGTCATAGGCAGCACTGCTAAGGACAGTAGTCGGTG
GCCCCATAGCTGTGTCTGTGTGCTACAAAGTGGTTTAAGTGCACAGAGCATGCGCAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACC
TCAACTTCAACTGACAGGGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGA
GAGCGCTCAACTTCAACTGACAGGTTTGATTGGTTGGTTTGTGTTTGATTGTTTTTTTGTTTAT
TTGTTTATTCTCTAATAGAATGTAATTATATTTTAGAAACCACGCTAGTGTACTTTTCTCTGCT
CCAGTGTGTACATGCAGCAGTTCCCACAGATGTGTTGTTAATATGAAAATTGCTTTAAAGATGT
GAGTAGCCACTGGTCCTGTTCATTTTCACTGAGGATTCCTCTTGAGTCAGAGCCTTGCTGCAGG
CTCCGTTTGCTGTTACGGCTGACGACAGTGAAGAAGTAATAGCTTATGTTTGTGACCCATCCTA
ATATATTTCCCAGCTGCCCTAACTTCCAGTTCCCACCTACCTCCACAGACCTCCTAACAATCCC
GGACATCAGGAAGTGTTTATATCGAGTCACATTCAAGACCTGGGCTGGCCCCAGGCGATTTTAT
ACAGCACAAGAAGTGCTTGATCAAATGTCTGTCCCAGGTGACTCTTACTTGGGATTTCTGGGTG
ATTTTGAAAACTAATGTGTTTTTTAAAGATATAATAATAGTCTTTGACTTTGTAAAAAAAATCT
ATCTGTATAGCATTTTATTACCAAATACAGAAAGTGGAGGACCTTCAGCAGTTTTTCATTTCAG
TTCACCAAACTCCCTTCTTGCTTTAAGGCATGTGCTCTACTTTGGAAGGAAACAGAAACAACAC
AGAGCCTCCTGCCTGAATGGTGTCTGCCGCTCACGAACAACCTTCCCTCCCTCTCTCTCAATGG
GCCAAAAATTATTGGTGATCTAAATTTTGGATGAATTTCGTTTGTCCTATTTTTAACATTCCAC
CATTTGCTGGCTCTGTTAACGTGATGGAGAGTGTACCTGGTTTAGATTGTACCTATAACATGTA
GGCGCCATGTGGTAGGTGAAAACTGATCACAACACTTGACAGCCTAGAGAAAGAAAGAAAGTTC
CAGGCTCTGTCCCCAAAAGGAAAGGAGAATGGCATGCAGCTAATCGGACGCTTAAGAGCCCTCG
CTGCCGCCCCCACCTGTTCTGATCTTCCTTGCTGCATGGTAGATCGGCCTGTGCAGGTGAGAAC
CGGCCACCATCTGGCATGCCATTTCTACCCACCGTGCCTTTTACCATCCAATCTATTGAAGACG
GATTCCGAATCCTACATTGCTGTTGTTACATGCAAAGCAAAAAGAACGTATTTAATTTGAAACC
TGGTTCAAAGCTCAAGTATGGTGTTTTGTTTTGTTTTTTAAGCGCCAGTGCTCCAGCATCGCAT
GCATGTGGAGATCTGTAACTGGATTGCTGGTGTTTCTTAGGACAAGTCAGTCCTGCTTCCCAGC
CAGAGTTTCCTGGAGCCAGGGCATGGCTTCTGCATGATGGCTTCATCACTAATAGGAAAAGCAG
AAGTGTCCTCAGGCCAGTGCCAAGAAGTATAAGTCAATGTCTTTCAGCAGCTGACAGACAGGAT
GTTGGGCACAGTGTGCCCACACATTGTTTCTTCTCAGGATCCAGGGAAAGGGGCGTTTGAAAGA
TTTAGGACAAAGTAGGTAGAAACTTGTAGCCAGTCTTAGAGAGGGGAGAGAGAAACACCAGCTT
GTATAATGTATGTAAGTTTGCTTAGCCACCTCGTGCACCCCATTATTGCCTTTACTGTTCTCCT
AGGCATTGCCAATATAGAAAGTACTTTGAGCCGCTTCTGTTATATTTGGGATACTTACTGGTAC
CCACTGTGCGTGACTTGCCGATCTAGGCTGTGCTTTTGGTGATAACTAACCCATGCCGCGGTGC
CATCGTCCGTGTAAGTCAAAGGCTGCTGTAGAGCCTGTGAGCTGGCTTTGACACTGAAACAGGA
CCTGTGTGCTAGATGTGCATTTTTGCTGAATGAAGGGTTTGTTCGTATTATTTTTAATACTATT
GTTTGATTTCTTGTAAATGCTGTGAATCTCTATTTGTCATTTTGTATCTGTATATTAAAATTAA
TTTGCCAAGCTG

hide sequence

RefSeq Acc Id:

XM_006252115 ⟹ XP_006252177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	39,052,586 - 39,083,752 (+)	NCBI
mRatBN7.2	15	34,876,067 - 34,907,645 (+)	NCBI
Rnor_6.0	15	41,035,379 - 41,066,645 (+)	NCBI
Rnor_5.0	15	44,749,770 - 44,878,760 (+)	NCBI

Sequence:

show sequence

TGTGTGTGTGTGTGTGTGTGCGTGTTTTGCAGGTGATTAAATCCATAGCCTTAACTTGGGTGTA
CCCTAAGCTTTGGTACTGTTGAATTGATTTATTTTGAGGCAAGATCTCACTACCACAGATGCAG
GCTAGCTTTGGACTTACTGTTCTCCAGAGTGAAGGGTTTACAGACATGCACCACCTGACCTAGC
TTGATGCTGTGACTGCCCAGGGAACCTGGCTGTTTCTAGGATCCCTGGGTATTTACAAGTTGCA
GTGGCCCAGGACAGCTAACCTTTATCAGGAACCAGAGAGGTGGCCCAGATACTGAGTCAAATCT
TTCAAACAACCAGGGGAGGGTCATGAGTGTCCAGCTCCCCTCCTCAGCACGTGAGGAAGCGGAA
GCCAGGTGGAAACTTGCGTTAATCTAGTGAAGGAAGCAGTGGGTTGGCTCCCTCTGGTTTTGAA
ACACAAGCTTACGATCGCCCCTGCATTTTACCAGCTGCCTTTATCACTTGTTTGACCCATACAT
TGAGGATGGTCACACGACCAGTGGTTTTGTGTGTATTAGCTTGTTATTCATAAAGTTTAAAAGA
CAGTGACTTCCTGTCTAGAAGAAATGAAGGAAGCACACTGCTGACAGCCGCCTCGTCAAATGTA
AAAGAGTAGCCTGATAATTGCTTATTTGGGAAATACAGAAAAGCATGAAGGAATTAAAAATAAC
TCACCCTGTTATTTCATGGAACTGCTTTTAAAACAAAGCCCATATTTCACATAGTAGCGGATAC
AAGTATTACTTTCATACACATACTTATTATGTGTCTATCTTAGTTTTTACACATACTTTTTTTC
AAACAAAAGTCCCTTCTTTAGTGATTCCATAAATTATAGTTAGTGTTATGTAGCATAACTCAAA
TTTTTGGCATTCCATGCTGCGAAATCTTAACTCCATTTCCAAACCCAGCAACCTCTGTGCTTTT
CTCTCTGAAACAAACCTTTGGGAAAGTGCTCTGTGAGGTGAGGGCAGCCCTGGGGGCTGGTGTT
AAAAGCAGCACTTTTCCATCACTCACTGAGCCGCTCAGTGGATTTGCCTTCGTTTAGAATTTCC
TCCCAAAAGCCAGCGCGTGGTGATGTTGCTGGAGCGACTAAGCCTGAGTCACGGGCAGCAGGCT
GTTAGTTTCTGGGCAGCTCCGGCCAGGAGAGCACACAACAGTCAAGAGTTCCCGCAGCTGCCAG
CCTGACCCGCCTGCCACCCTCCAGGATGAGCTGAGGACCTGCTTCCTTGGTCACACCCTCCACC
TGCTGTGTGTGTTCAAACAGAAGGATGGTAGCTAGAGGAGAAATAGCACGATTTTGGAGCCTGG
AAAGCCTTCACATGGTCTCTTCGGATGGAGGTGCGGAGTCCTCGGCCTTAGTGGATGACAATGG
TAGTGAGGAAGACTTCAGCTATGAGGAGCTCTGCCAGGCCAACCCTCGATACCTCCAGCCGGGC
GGGGAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGCGTGGTCTGTGCAGAAGCACTGT
GGGACCATGTGACCATGGATGACCAGGAACTAGGCTTCAAGGCCGGAGATGTCATCCAGGTCCT
GGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTCCCTGCC
AGCTTTGTTAGGCTTCGAGTCAACCAGGAGGAGCTGCCCGAGCCCTGCAGCAGCTCCCAGGGGG
AGGAGCAGGACGAGGACGCCAGCAAAGCCCGCCACAAGCACCCCGAGAGCCAGCAGCAGATGCG
GACCAACGTCATCCAGGAGATCATGAACACCGAGCGAGTGTACATCAAGCACCTCAAGGACATC
TGCGAGGGCTACATCCGACAGTGTCGTAAGCACACGGGAATGTTCACCGTTGGGCAGCTAGCCA
CTATTTTCGGAAACATTGAAGACATTTACAAATTCCAAAGGAAGTTTCTGAAAGACCTCGAGAA
ACAGTACAACAAAGAAGAACCTCACTTAAGTGAGATAGGATCCTGCTTTCTTCAGCACCAAGAG
GGCTTTGCCATCTACTCTGAGTACTGTAACAACCACCCAGGAGCCTGTGTGGAGTTGTCCAACC
TCATGAAGCAGAGCAAGTACCGGCACTTCTTTGAGGCCTGCCGCCTGCTCCAGCAGATGATCGA
TATAGCCCTGGATGGCTTCCTCCTCACACCGGTGCAGAAGATCTGCAAATACCCGCTGCAGCTG
GCTGAGCTGCTCAAGTACACCACCCAGGAGCACAGCGACTACAACAATATAAAGGCGGCCTATG
AAGCCATGAAGAATGTGGCCTGCTTGATCAATGAACGCAAGCGTAAGCTAGAGAGCATCGACAA
GATCGCCCGCTGGCAGGTGTCCATCGTGGGCTGGGAGGGCCTGGACATTCTGGACCGAAGCTCC
GAGCTGATTCACTCCGGAGAGCTAACCAAGATCACCAGGCAGGGCAAGACCCAGCAGCGAGTCT
TCTTCCTGTTCGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTATA
CTACAAGGGCCGCATGGACATGGATGAGGTGGACATTGTGGATGTGGAGGATGGGCGGGACAAG
GACTGGAACCTCAGCATGCGAAACGCCTTCAAGTTGGTCAGCAAAGCCACGGATGAGGTTCACC
TGTTCTGCGCCAGAAAGCAGGAGGACAAGGCCAGGTGGCTGCAGGCCTATGCGGACGAGAGGCG
GCGGGTGCAGGAAGACCAGCAGATGGGAATGGAAATCTCAGAAAATCAGAAGAAACTCGCCATG
TTGAACGCCCAGAAGGCAGGACATGGGAAATCTAAAGGCTACAACAGCTGCCCTGTGGCCCCAC
CCCACCAGAGCCTGCCACCCCTCCACCAGCGCCACATCACTGTGCCTACCAGCATCCCGCAGCA
GCAGGTCTTCGCCTTGGCTGAGCCCAAGAGGAAGCCATCGCTGTTCTGGCACACCTTCCACAAA
CTCACCCCATTCCGGAAGTGAGCCTACCCAGGGGGCACCTCTGAGGTACTGTGAGGAGGAAGAC
CAGTTTTGTCTCTTCAGCGTGATGTCCAGGGATGGCTTCTTGCTCAGTGCTGAACACTTCATTT
GGGGATCGATGAAGGGGAAAAGAAGTTGGACTCAGCTTTGACCTTGAGAGGCCCCGGCACCCTT
GTGGAAGGGAGGAGGCCATGAAGCACTGCTCTGTCCCACACTGGAAGCCATACTCTCCGATGGC
CATGATATAGGGACCAGGGCCTCTCTGCATGGAGACTGCTGACTCAGTTATCCCCTGTGAGTTT
CCCACTGACAGTCACACTCCTGCTGCAGTTCCAGACGGTATCAGGAGCCTTTCAGTGCCTCAGG
AGCAACTACATTAAGGACGGCTTCTGTGTTTGATCTTAAGAAGCTCACTGACCAGTTGGTAGGA
TGTTGGCAGCCATGGGATAACCTGGGGTCAGATCAGGCCCAGAAGAGACCAGGAAGGAGCTAGA
GCCAATGGGGCAGGTGCCTACAGTTCTCTAAGGTGTAGCAGATGCCAGGCTAGAGTGTAGGTCT
CACCCTGCGAGGTTCCTTATTCACAAGAGAGTCAGGAGGGAAGGCTGCTGCCACCTGACTTGTC
CCTCCCACCTCTTCAAACAGAGGTGACGCCTTGCTCACCCCTCACTACCTAAGAACCTGCCACT
CTCGGAAGTAAGGGTGACATGAACCGTTTAACTTTGGTAACCTGTGCAGCAGCAGCAGCCATTT
GCATCACCAGTGGGATGATGAGGACACTGGCATCCACAGAGAAAACAAGGGGCGAAACTGTCCT
GCTTCTTGGGGAAATGGAAACACCTCTGTCACACGACCCCAAAACAGTAGTACTGGAGGCTATG
CCAGCTGGGGAATAGTCTTGATGGCTCCTTAGCTCTGAGAGAGCTGTCTCTTAAAGAGGACTAC
ACAAACTGACACCCACAGAGAGGAACCTTTCTCTGTTGACACTGACTTGATGGAAATGCCTTTC
CACTGATCTGAGGGAGACTGGCTCTGCATTTTAATCTACATAGTGGGCTGGTCAGGAGAGATCC
TGCCGTGCAGCTCATGCGTTCCTTTTAGACAAACGTGTTCTTGTGTGCTGTTCTTGCAAGGTCC
TCACCTCTCATCAGCTCTCCATTGAGACCAAACAAGTCTGCAGTGTTAGAGGTAAAGGTATTGG
TCAGTCATTGCACAGTTCACCTTGTCTCCATATCTATGCCTGGAAAACAAATGACGTCACAGCA
AATAACCTTGATCCTGGACTTCAGCCCTGCTGTGCACCCTGGCATGGTCATAGGCAGCACTGCT
AAGGACAGTAGTCGGTGGCCCCATAGCTGTGTCTGTGTGCTACAAAGTGGTTTAAGTGCACAGA
GCATGCGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGACCTCAACTTCAACTGACAGGGAGAGAGAGAGACAGAGAGAGAGACAGAG
AGAGAGAGAGAGAGAGAGAGCGCTCAACTTCAACTGACAGGTTTGATTGGTTGGTTTGTGTTTG
ATTGTTTTTTTGTTTATTTGTTTATTCTCTAATAGAATGTAATTATATTTTAGAAACCACGCTA
GTGTACTTTTCTCTGCTCCAGTGTGTACATGCAGCAGTTCCCACAGATGTGTTGTTAATATGAA
AATTGCTTTAAAGATGTGAGTAGCCACTGGTCCTGTTCATTTTCACTGAGGATTCCTCTTGAGT
CAGAGCCTTGCTGCAGGCTCCGTTTGCTGTTACGGCTGACGACAGTGAAGAAGTAATAGCTTAT
GTTTGTGACCCATCCTAATATATTTCCCAGCTGCCCTAACTTCCAGTTCCCACCTACCTCCACA
GACCTCCTAACAATCCCGGACATCAGGAAGTGTTTATATCGAGTCACATTCAAGACCTGGGCTG
GCCCCAGGCGATTTTATACAGCACAAGAAGTGCTTGATCAAATGTCTGTCCCAGGTGACTCTTA
CTTGGGATTTCTGGGTGATTTTGAAAACTAATGTGTTTTTTAAAGATATAATAATAGTCTTTGA
CTTTGTAAAAAAAATCTATCTGTATAGCATTTTATTACCAAATACAGAAAGTGGAGGACCTTCA
GCAGTTTTTCATTTCAGTTCACCAAACTCCCTTCTTGCTTTAAGGCATGTGCTCTACTTTGGAA
GGAAACAGAAACAACACAGAGCCTCCTGCCTGAATGGTGTCTGCCGCTCACGAACAACCTTCCC
TCCCTCTCTCTCAATGGGCCAAAAATTATTGGTGATCTAAATTTTGGATGAATTTCGTTTGTCC
TATTTTTAACATTCCACCATTTGCTGGCTCTGTTAACGTGATGGAGAGTGTACCTGGTTTAGAT
TGTACCTATAACATGTAGGCGCCATGTGGTAGGTGAAAACTGATCACAACACTTGACAGCCTAG
AGAAAGAAAGAAAGTTCCAGGCTCTGTCCCCAAAAGGAAAGGAGAATGGCATGCAGCTAATCGG
ACGCTTAAGAGCCCTCGCTGCCGCCCCCACCTGTTCTGATCTTCCTTGCTGCATGGTAGATCGG
CCTGTGCAGGTGAGAACCGGCCACCATCTGGCATGCCATTTCTACCCACCGTGCCTTTTACCAT
CCAATCTATTGAAGACGGATTCCGAATCCTACATTGCTGTTGTTACATGCAAAGCAAAAAGAAC
GTATTTAATTTGAAACCTGGTTCAAAGCTCAAGTATGGTGTTTTGTTTTGTTTTTTAAGCGCCA
GTGCTCCAGCATCGCATGCATGTGGAGATCTGTAACTGGATTGCTGGTGTTTCTTAGGACAAGT
CAGTCCTGCTTCCCAGCCAGAGTTTCCTGGAGCCAGGGCATGGCTTCTGCATGATGGCTTCATC
ACTAATAGGAAAAGCAGAAGTGTCCTCAGGCCAGTGCCAAGAAGTATAAGTCAATGTCTTTCAG
CAGCTGACAGACAGGATGTTGGGCACAGTGTGCCCACACATTGTTTCTTCTCAGGATCCAGGGA
AAGGGGCGTTTGAAAGATTTAGGACAAAGTAGGTAGAAACTTGTAGCCAGTCTTAGAGAGGGGA
GAGAGAAACACCAGCTTGTATAATGTATGTAAGTTTGCTTAGCCACCTCGTGCACCCCATTATT
GCCTTTACTGTTCTCCTAGGCATTGCCAATATAGAAAGTACTTTGAGCCGCTTCTGTTATATTT
GGGATACTTACTGGTACCCACTGTGCGTGACTTGCCGATCTAGGCTGTGCTTTTGGTGATAACT
AACCCATGCCGCGGTGCCATCGTCCGTGTAAGTCAAAGGCTGCTGTAGAGCCTGTGAGCTGGCT
TTGACACTGAAACAGGACCTGTGTGCTAGATGTGCATTTTTGCTGAATGAAGGGTTTGTTCGTA
TTATTTTTAATACTATTGTTTGATTTCTTGTAAATGCTGTGAATCTCTATTTGTCATTTTGTAT
CTGTATATTAAAATTAATTTGCCAAGCTG

hide sequence

RefSeq Acc Id:

XM_039093323 ⟹ XP_038949251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	39,043,590 - 39,083,752 (+)	NCBI
mRatBN7.2	15	34,867,449 - 34,907,645 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178615	(Get FASTA)	NCBI Sequence Viewer
	NP_001418356	(Get FASTA)	NCBI Sequence Viewer
	NP_001418357	(Get FASTA)	NCBI Sequence Viewer
	NP_001418358	(Get FASTA)	NCBI Sequence Viewer
	XP_006252175	(Get FASTA)	NCBI Sequence Viewer
	XP_006252176	(Get FASTA)	NCBI Sequence Viewer
	XP_006252177	(Get FASTA)	NCBI Sequence Viewer
	XP_038949251	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018406.7
	ENSRNOP00000087721
	ENSRNOP00000087721.1
	ENSRNOP00000090978
	ENSRNOP00000090978.1
	ENSRNOP00000106141

RefSeq Acc Id:

NP_001178615 ⟸ NM_001191686

- Sequence:

show sequence

MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGGCKSSSSDPEAGEARLSPSKLVRLFSGSR
KRMNSNSERPRSVVVVGNSSTWNALASFRKMGSFKRLKSSVLQGIQNREGAEVSKEESSGDQGR
AAPNGTIAILGKGLGRCASLGPVGDGAGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLD
LGRQSVPEPAVCEIQVRDPEPSRAVPLPRRSKSIDSLSVLKSSFKRKSASNLTELQGDRQVPSR
TLSSFFTDSEKPGGSERRTRRWRSPIRAKDFDRVLKLVSNVKEAAWKRETPRSAAPSPGSGLGD
ANPLLAPRSKLHDDYSRRTSSSVEPDARRGGPLSSPCASAPCTAAPYTAPEPHLDVDTAVFPLE
SKSAQPLGTDGPHTSSSSPIPTDTEGLSQASSEAHTGSQHPFDPVQLPTPLRPTTPKPQSPQSP
GSTKCPSSLSVLSLSSADSEERSEDAVHRQAGPMSLQDAVPAAAGDVGGENSESSFPSNPDGAT
SPEERKEEVRVVTEDDWRQGSALEEEQNEAPRISRRKWGSGRRTGPRPLSDYGQLASRSLSIPE
DAIATDPPGEDRVDRMHPASVTTTSQDPCTSSGCPRGGRRRRPISVIGGVSFYGNTQAEDVENL
LVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKTSNVSSDGGAESSALV
DDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDV
IQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPEPCSSSQGEEQDEDASKARHKHPESQ
QQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVGQLATIFGNIEDIYKFQRKFLK
DLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQSKYRHFFEACRLLQ
QMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKNVACLINERKRKLE
SIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKTQQRVFFLFDHQLVSCKKDLLRR
DMLYYKGRMDMDEVDIVDVEDGRDKDWNLSMRNAFKLVSKATDEVHLFCARKQEDKARWLQAYA
DERRRVQEDQQMGMEISENQKKLAMLNAQKAGHGKSKGYNSCPVAPPHQSLPPLHQRHITVPTS
IPQQQVFALAEPKRKPSLFWHTFHKLTPFRK

hide sequence

RefSeq Acc Id:

XP_006252175 ⟸ XM_006252113

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGGCKSSSSDPEAGEARLSPSKLVRLFSGSR
KRMNSNSERPRSVVVVGNSSTWNALASFRKMGSFKRLKSSVLQGIQNREGAEVSKEESSGDQGR
AAPNGTIAILGKGLGRCASLGPVGDGAGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLD
LGRQSVPEPAVCEIQVRDPEPSRAVPLPRRSKSIDSLSVLKSSFKRKSASNLTELQGDRQVPSR
TLSSFFTDSEKPGGSERRTRRWRSPIRAKDFDRVLKLVSNVKEAAWKRETPRSAAPSPGSGLGD
ANPLLAPRSKLHDDYSRRTSSSVEPDARRGGPLSSPCASAPCTAAPYTAPEPHLDVDTAVFPLE
SKSAQPLGTDGPHTSSSSPIPTDTEGLSQASSEAHTGSQHPFDPVQLPTPLRPTTPKPQSPQSP
GSTKCPSSLSVLSLSSADSEERSEDAVHRQAGPMSLQDAVPAAAGDVGGENSESSFPSNPDGAT
SPEERKEEVVTEDDWRQGSALEEEQNEAPRISRRKWGSGRRTGPRPLSDYGQLASRSLSIPEDA
IATDPPGEDRVDRMHPASVTTTSQDPCTSSGCPRGGRRRRPISVIGGVSFYGNTQAEDVENLLV
QPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKTSNVSSDGGAESSALVDD
NGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQ
VLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPEPCSSSQGEEQDEDASKARHKHPESQQQ
MRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVGQLATIFGNIEDIYKFQRKFLKDL
EKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQSKYRHFFEACRLLQQM
IDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKNVACLINERKRKLESI
DKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKTQQRVFFLFDHQLVSCKKDLLRRDM
LYYKGRMDMDEVDIVDVEDGRDKDWNLSMRNAFKLVSKATDEVHLFCARKQEDKARWLQAYADE
RRRVQEDQQMGMEISENQKKLAMLNAQKAGHGKSKGYNSCPVAPPHQSLPPLHQRHITVPTSIP
QQQVFALAEPKRKPSLFWHTFHKLTPFRK

hide sequence

RefSeq Acc Id:

XP_006252176 ⟸ XM_006252114

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDVVNCLFLQCVCGPPLPIARSQVVTEDDWRQGSALEEEQNEAPRISRRKWGSGRRTGPRPLSD
YGQLASRSLSIPEDAIATDPPGEDRVDRMHPASVTTTSQDPCTSSGCPRGGRRRRPISVIGGVS
FYGNTQAEDVENLLVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKTSN
VSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVT
MDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPEPCSSSQGEEQDE
DASKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVGQLATIFGN
IEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQS
KYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKN
VACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKTQQRVFFLFD
HQLVSCKKDLLRRDMLYYKGRMDMDEVDIVDVEDGRDKDWNLSMRNAFKLVSKATDEVHLFCAR
KQEDKARWLQAYADERRRVQEDQQMGMEISENQKKLAMLNAQKAGHGKSKGYNSCPVAPPHQSL
PPLHQRHITVPTSIPQQQVFALAEPKRKPSLFWHTFHKLTPFRK

hide sequence

RefSeq Acc Id:

XP_006252177 ⟸ XM_006252115

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVARGEIARFWSLESLHMVSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINE
LISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVN
QEELPEPCSSSQGEEQDEDASKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQC
RKHTGMFTVGQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEY
CNNHPGACVELSNLMKQSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTT
QEHSDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGEL
TKITRQGKTQQRVFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVDIVDVEDGRDKDWNLSMRN
AFKLVSKATDEVHLFCARKQEDKARWLQAYADERRRVQEDQQMGMEISENQKKLAMLNAQKAGH
GKSKGYNSCPVAPPHQSLPPLHQRHITVPTSIPQQQVFALAEPKRKPSLFWHTFHKLTPFRK

hide sequence

Ensembl Acc Id:

ENSRNOP00000018406 ⟸ ENSRNOT00000018407

RefSeq Acc Id:	XP_038949251 ⟸ XM_039093323
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000087721 ⟸ ENSRNOT00000115440

Ensembl Acc Id:

ENSRNOP00000090978 ⟸ ENSRNOT00000114572

Ensembl Acc Id:

ENSRNOP00000106141 ⟸ ENSRNOT00000126067

Protein Domains

DH PH SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWB4-F1-model_v2	AlphaFold	D3ZWB4	1-1245	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699736

Promoter ID:

EPDNEW_R10260

Type:

initiation region

Name:

Spata13_1

Description:

spermatogenesis associated 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	40,937,698 - 40,937,758	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307364	AgrOrtholog
BioCyc Gene	G2FUF-13519	BioCyc
Ensembl Genes	ENSRNOG00000013707	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018407.8	UniProtKB/TrEMBL
	ENSRNOT00000114572	ENTREZGENE
	ENSRNOT00000114572.1	UniProtKB/TrEMBL
	ENSRNOT00000115440	ENTREZGENE
	ENSRNOT00000115440.1	UniProtKB/TrEMBL
	ENSRNOT00000126067	ENTREZGENE
Gene3D-CATH	1.20.900.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	DBL_dom_sf	UniProtKB/TrEMBL
	DH-domain	UniProtKB/TrEMBL
	GDS_CDC24_CS	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	SOS1_NGEF_PH	UniProtKB/TrEMBL
NCBI Gene	305938	ENTREZGENE
PANTHER	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4	UniProtKB/TrEMBL
	SPERMATOGENESIS-ASSOCIATED 13	UniProtKB/TrEMBL
Pfam	RhoGEF	UniProtKB/TrEMBL
	SH3_1	UniProtKB/TrEMBL
	SOS1_NGEF_PH	UniProtKB/TrEMBL
PhenoGen	Spata13	PhenoGen
PROSITE	DH_1	UniProtKB/TrEMBL
	DH_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013707	RatGTEx
SMART	RhoGEF	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	DH-domain	UniProtKB/TrEMBL
	PH domain-like	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
UniProt	A0A8I6A3P0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ACW7	ENTREZGENE, UniProtKB/TrEMBL
	A6K6A4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWB4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Spata13	spermatogenesis associated 13	Spata13_predicted	spermatogenesis associated 13 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Spata13_predicted	spermatogenesis associated 13 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar