Znf277 (zinc finger protein 277) - Rat Genome Database

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Gene: Znf277 (zinc finger protein 277) Heterocephalus glaber
Analyze
Symbol: Znf277
Name: zinc finger protein 277
RGD ID: 18915493
Description: ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); regulation of cellular senescence (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog); schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473917,574,157 - 17,705,636 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Znf277
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473917,574,157 - 17,705,636 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF277
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387112,206,695 - 112,343,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7112,206,695 - 112,343,934 (+)EnsemblGRCh38hg38GRCh38
GRCh377111,846,750 - 111,983,989 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367111,633,879 - 111,771,225 (+)NCBINCBI36Build 36hg18NCBI36
Build 347111,440,593 - 111,577,035NCBI
Celera7106,658,932 - 106,796,266 (+)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7106,214,402 - 106,351,731 (+)NCBIHuRef
CHM1_17111,780,847 - 111,918,219 (+)NCBICHM1_1
T2T-CHM13v2.07113,525,002 - 113,662,218 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27111,215,182 - 111,352,524 (+)NCBI
Zfp277
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391240,365,045 - 40,495,789 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1240,365,045 - 40,495,901 (-)EnsemblGRCm39 Ensembl
GRCm381240,315,046 - 40,445,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1240,315,046 - 40,445,902 (-)EnsemblGRCm38mm10GRCm38
MGSCv371241,041,633 - 41,172,377 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361240,825,469 - 40,956,203 (-)NCBIMGSCv36mm8
Celera1241,743,155 - 41,872,227 (-)NCBICelera
Cytogenetic Map12B1NCBI
cM Map1218.06NCBI
Zfp277
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8663,110,609 - 63,239,941 (-)NCBIGRCr8
mRatBN7.2657,383,454 - 57,512,785 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl657,383,951 - 57,512,765 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx657,669,350 - 57,797,551 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0657,984,297 - 58,112,500 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0657,452,841 - 57,581,971 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0660,246,209 - 60,374,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl660,246,214 - 60,374,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0669,835,887 - 69,962,765 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera656,425,923 - 56,552,093 (-)NCBICelera
Cytogenetic Map6q21NCBI
Znf277
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541015,971,513 - 16,083,482 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541015,971,524 - 16,083,482 (+)NCBIChiLan1.0ChiLan1.0
ZNF277
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26149,034,149 - 149,175,249 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan171,044,404 - 1,182,704 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07104,169,603 - 104,307,262 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17116,872,205 - 117,008,463 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7116,872,205 - 117,008,463 (+)Ensemblpanpan1.1panPan2
ZNF277
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11451,859,609 - 51,965,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1451,859,489 - 51,963,898 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1451,313,644 - 51,422,429 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01451,905,519 - 52,014,447 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1451,905,488 - 52,014,444 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11451,920,190 - 52,028,999 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01451,603,769 - 51,712,585 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01451,976,077 - 52,084,965 (+)NCBIUU_Cfam_GSD_1.0
Znf277
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511871,564,413 - 71,683,797 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936795702,061 - 823,566 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936795704,144 - 823,518 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF277
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1833,311,321 - 33,423,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11833,309,936 - 33,423,106 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21836,141,031 - 36,160,614 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF277
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12181,022,547 - 81,161,212 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2181,022,653 - 81,160,866 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604222,654,780 - 22,793,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004839626   ⟹   XP_004839683
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,634 (-)NCBI
RefSeq Acc Id: XM_013070303   ⟹   XP_012925757
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,632 (-)NCBI
RefSeq Acc Id: XM_021254172   ⟹   XP_021109831
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,636 (-)NCBI
RefSeq Acc Id: XM_021254173   ⟹   XP_021109832
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,634 (-)NCBI
RefSeq Acc Id: XM_021254174   ⟹   XP_021109833
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,632 (-)NCBI
RefSeq Acc Id: XM_021254175   ⟹   XP_021109834
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,632 (-)NCBI
RefSeq Acc Id: XM_021254176   ⟹   XP_021109835
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473917,574,157 - 17,705,632 (-)NCBI
RefSeq Acc Id: XP_021109831   ⟸   XM_021254172
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SJZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109832   ⟸   XM_021254173
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SLX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839683   ⟸   XM_004839626
- Peptide Label: isoform X1
- UniProtKB: A0AAX6NYI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925757   ⟸   XM_013070303
- Peptide Label: isoform X4
- UniProtKB: A0AAX6QUJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109835   ⟸   XM_021254176
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SLX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109834   ⟸   XM_021254175
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SLX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109833   ⟸   XM_021254174
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SLX0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016417 ENTREZGENE
Ensembl Transcript ENSHGLT00000023231 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZN622/Rei1/Reh1_Znf-C2H2 UniProtKB/TrEMBL
  ZNF277 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf277 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 277 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 277 UniProtKB/TrEMBL
Pfam zf-C2H2_2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0AAX6NYI3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QUJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SJZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SLX0 ENTREZGENE, UniProtKB/TrEMBL