Kif13b (kinesin family member 13B) - Rat Genome Database

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Gene: Kif13b (kinesin family member 13B) Heterocephalus glaber
Analyze
Symbol: Kif13b
Name: kinesin family member 13B
RGD ID: 18913109
Description: ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN regulation of axonogenesis (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); microvillus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF13B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475823,653,999 - 23,809,156 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475823,651,628 - 23,809,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kif13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475823,653,999 - 23,809,156 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475823,651,628 - 23,809,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KIF13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38829,067,278 - 29,263,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl829,067,278 - 29,263,124 (-)EnsemblGRCh38hg38GRCh38
GRCh37828,924,795 - 29,120,587 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36828,980,714 - 29,176,529 (-)NCBINCBI36Build 36hg18NCBI36
Build 34828,980,714 - 29,176,560NCBI
Celera827,884,538 - 28,080,223 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef827,469,681 - 27,665,516 (-)NCBIHuRef
CHM1_1829,126,742 - 29,322,601 (-)NCBICHM1_1
T2T-CHM13v2.0829,345,440 - 29,541,595 (-)NCBIT2T-CHM13v2.0
Kif13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,889,633 - 65,047,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,884,714 - 65,047,066 (+)EnsemblGRCm39 Ensembl
GRCm381464,652,492 - 64,809,618 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,647,265 - 64,809,617 (+)EnsemblGRCm38mm10GRCm38
MGSCv371465,271,368 - 65,425,133 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361463,606,641 - 63,760,406 (+)NCBIMGSCv36mm8
Celera1462,413,894 - 62,568,476 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.77NCBI
Kif13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,084,059 - 43,241,719 (+)NCBIGRCr8
mRatBN7.21538,908,257 - 39,066,021 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,924,624 - 39,084,879 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1540,773,539 - 40,927,917 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,924,221 - 42,078,598 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,368,857 - 40,523,293 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01548,030,837 - 48,192,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,030,973 - 48,189,951 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,843,635 - 51,936,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,011,649 - 44,167,269 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11544,027,348 - 44,182,969 (+)NCBI
Celera1538,585,791 - 38,739,336 (+)NCBICelera
Cytogenetic Map15p12NCBI
Kif13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540351,382,088 - 51,536,436 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540351,378,928 - 51,536,509 (-)NCBIChiLan1.0ChiLan1.0
KIF13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2747,614,791 - 47,809,195 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1823,327,677 - 23,524,972 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0828,352,929 - 28,550,180 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1825,549,547 - 25,743,287 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,552,769 - 25,743,220 (-)Ensemblpanpan1.1panPan2
KIF13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12528,284,463 - 28,484,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2528,284,145 - 28,487,171 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2528,931,970 - 29,132,616 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02528,438,555 - 28,639,271 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12528,398,410 - 28,599,145 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02528,285,750 - 28,486,656 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02528,448,001 - 28,648,812 (+)NCBIUU_Cfam_GSD_1.0
Kif13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049436,701,429 - 6,839,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366751,747,041 - 1,884,724 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366751,747,041 - 1,884,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1412,897,320 - 13,100,149 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11412,913,615 - 13,100,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21414,139,354 - 14,342,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1827,179,589 - 27,378,787 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl827,179,587 - 27,378,754 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605214,749,567 - 14,945,142 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000006565   ⟹   ENSHGLP00000006483
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475823,653,999 - 23,809,156 (-)Ensembl
RefSeq Acc Id: XM_004848437   ⟹   XP_004848494
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475823,651,628 - 23,809,233 (-)NCBI
RefSeq Acc Id: XM_004848439   ⟹   XP_004848496
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475823,671,336 - 23,809,233 (-)NCBI
RefSeq Acc Id: XM_013073408   ⟹   XP_012928862
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475823,651,628 - 23,809,233 (-)NCBI
RefSeq Acc Id: XM_013073409   ⟹   XP_012928863
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475823,651,628 - 23,809,233 (-)NCBI
RefSeq Acc Id: XM_021261336   ⟹   XP_021116995
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475823,651,628 - 23,809,156 (-)NCBI
RefSeq Acc Id: XM_021261337   ⟹   XP_021116996
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475823,665,163 - 23,809,233 (-)NCBI
RefSeq Acc Id: XP_012928863   ⟸   XM_013073409
- Peptide Label: isoform X3
- UniProtKB: G5AMH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848494   ⟸   XM_004848437
- Peptide Label: isoform X2
- UniProtKB: G5AMH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928862   ⟸   XM_013073408
- Peptide Label: isoform X1
- UniProtKB: G5AMH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116995   ⟸   XM_021261336
- Peptide Label: isoform X4
- UniProtKB: G5AMH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116996   ⟸   XM_021261337
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004848496   ⟸   XM_004848439
- Peptide Label: isoform X5
Ensembl Acc Id: ENSHGLP00000006483   ⟸   ENSHGLT00000006565


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004739 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006565 ENTREZGENE
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/TrEMBL
  CAP Gly-rich-like domain UniProtKB/TrEMBL
  Kinesin motor domain UniProtKB/TrEMBL
InterPro CAP-Gly_dom_sf UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  Kinesin-like UniProtKB/TrEMBL
  Kinesin-like_KIF1-typ UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Kif13b ENTREZGENE
PANTHER PTHR47117:SF5 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam CAP_GLY UniProtKB/TrEMBL
  DUF3694 UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
  KIF1B UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE CAP_GLY_1 UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/TrEMBL
  KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART CAP_GLY UniProtKB/TrEMBL
  KISc UniProtKB/TrEMBL
Superfamily-SCOP Cap-Gly domain UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
  SMAD/FHA domain UniProtKB/TrEMBL
UniProt A0AAX6PBQ6_HETGA UniProtKB/TrEMBL
  A0AAX6PBR4_HETGA UniProtKB/TrEMBL
  A0AAX6QXE0_HETGA UniProtKB/TrEMBL
  A0AAX6QXI6_HETGA UniProtKB/TrEMBL
  A0AAX6T6U5_HETGA UniProtKB/TrEMBL
  A0AAX6TB29_HETGA UniProtKB/TrEMBL
  G5AMH1 ENTREZGENE, UniProtKB/TrEMBL