Kif13b (kinesin family member 13B) - Rat Genome Database
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Gene: Kif13b (kinesin family member 13B) Rattus norvegicus
Analyze
Symbol: Kif13b
Name: kinesin family member 13B
RGD ID: 1303307
Description: Predicted to have several functions, including 14-3-3 protein binding activity; microtubule binding activity; and nucleoside-triphosphatase activity. Predicted to be involved in microtubule-based movement and regulation of axonogenesis. Localizes to cytosol; microvillus; and paranode region of axon. Orthologous to human KIF13B (kinesin family member 13B); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: kinesin 13B; kinesin-like protein KIF13B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01548,030,837 - 48,192,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,030,973 - 48,189,951 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,843,635 - 51,936,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,011,649 - 44,167,269 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11544,027,348 - 44,182,969 (+)NCBI
Celera1538,585,791 - 38,739,336 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10859302   PMID:15923660   PMID:20194617   PMID:23077056  


Genomics

Comparative Map Data
Kif13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01548,030,837 - 48,192,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1548,030,973 - 48,189,951 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,843,635 - 51,936,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41544,011,649 - 44,167,269 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11544,027,348 - 44,182,969 (+)NCBI
Celera1538,585,791 - 38,739,336 (+)NCBICelera
Cytogenetic Map15p12NCBI
KIF13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl829,067,278 - 29,263,124 (-)EnsemblGRCh38hg38GRCh38
GRCh38829,067,278 - 29,263,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37828,924,795 - 29,120,610 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36828,980,714 - 29,176,529 (-)NCBINCBI36hg18NCBI36
Build 34828,980,714 - 29,176,560NCBI
Celera827,884,538 - 28,080,223 (-)NCBI
Cytogenetic Map8p12NCBI
HuRef827,469,681 - 27,665,516 (-)NCBIHuRef
CHM1_1829,126,742 - 29,322,601 (-)NCBICHM1_1
Kif13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,889,633 - 65,047,067 (+)NCBIGRCm39mm39
GRCm381464,652,492 - 64,809,618 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,647,265 - 64,809,617 (+)EnsemblGRCm38mm10GRCm38
MGSCv371465,271,368 - 65,425,133 (+)NCBIGRCm37mm9NCBIm37
MGSCv361463,606,641 - 63,760,406 (+)NCBImm8
Celera1462,413,894 - 62,568,476 (+)NCBICelera
Cytogenetic Map14D1NCBI
Kif13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540351,382,088 - 51,536,436 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540351,378,928 - 51,536,509 (-)NCBIChiLan1.0ChiLan1.0
KIF13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1825,549,547 - 25,743,287 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,552,769 - 25,743,220 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0828,352,929 - 28,550,180 (-)NCBIMhudiblu_PPA_v0panPan3
KIF13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2528,284,145 - 28,487,171 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12528,284,463 - 28,484,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kif13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366751,747,041 - 1,884,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11412,913,615 - 13,100,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21414,139,354 - 14,342,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF13B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1827,179,589 - 27,378,787 (-)NCBI
ChlSab1.1 Ensembl827,179,587 - 27,378,754 (-)Ensembl
Kif13b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475823,651,628 - 23,809,233 (-)NCBI

Position Markers
D15Rat91  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01548,080,297 - 48,080,498NCBIRnor6.0
Rnor_5.01551,827,547 - 51,827,748UniSTSRnor5.0
RGSC_v3.41544,060,131 - 44,060,332UniSTSRGSC3.4
RGSC_v3.41544,060,130 - 44,060,334RGDRGSC3.4
RGSC_v3.11544,075,831 - 44,076,032RGD
Celera1538,634,516 - 38,634,717UniSTS
Cytogenetic Map15p12UniSTS
RH 3.4 Map15289.9RGD
RH 3.4 Map15289.9UniSTS
RH 2.0 Map15265.0RGD
SHRSP x BN Map1533.4699RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15162301382Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15232787753535766Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15388113148881131Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151071919155719191Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151549236072568189Rat
9590272Scort14Serum corticosterone level QTL 142.780.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)151698090761980907Rat
8694427Bw163Body weight QTL 1634.820.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)151698090761980907Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151724964162249641Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151724964162249641Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151724964162249641Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151809320881255430Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151851391388036354Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152102134252831189Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152870974173709741Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)153321910189640841Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)153321910189640841Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)153321910189640841Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)153948079762596410Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153974955779033707Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153974955779033707Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154106809486068094Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154275724156027084Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154309747052831189Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:43
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000029757
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 3 27 11 18 11 3 3 52 33 38 11 3
Low 1 40 30 30 1 30 5 8 22 2 3 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_213626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07018227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07018228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07018229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07018230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07018231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07018232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07018233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01083459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ605719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000029757   ⟹   ENSRNOP00000032499
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1548,031,074 - 48,189,753 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085487   ⟹   ENSRNOP00000074800
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1548,030,973 - 48,189,951 (+)Ensembl
RefSeq Acc Id: NM_213626   ⟹   NP_998791
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01548,031,074 - 48,189,753 (+)NCBI
Rnor_5.01551,843,635 - 51,936,975 (+)NCBI
RGSC_v3.41544,011,649 - 44,167,269 (+)RGD
Celera1538,585,791 - 38,739,336 (+)RGD
Sequence:
RefSeq Acc Id: XM_008770753   ⟹   XP_008768975
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01548,030,837 - 48,192,932 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770754   ⟹   XP_008768976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01548,030,837 - 48,192,932 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770755   ⟹   XP_008768977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01548,030,837 - 48,175,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599695   ⟹   XP_017455184
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01548,030,837 - 48,183,375 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_998791   ⟸   NM_213626
- UniProtKB: Q70AM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768975   ⟸   XM_008770753
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768976   ⟸   XM_008770754
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008768977   ⟸   XM_008770755
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017455184   ⟸   XM_017599695
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000074800   ⟸   ENSRNOT00000085487
RefSeq Acc Id: ENSRNOP00000032499   ⟸   ENSRNOT00000029757
Protein Domains
CAP-Gly   Kinesin motor

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699787
Promoter ID:EPDNEW_R10309
Type:initiation region
Name:Kif13b_1
Description:kinesin family member 13B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01548,031,016 - 48,031,076EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 48159448 48159449 C T snv ACI/N (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 44136957 44136958 C T snv ACI/N (KNAW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303307 AgrOrtholog
Ensembl Genes ENSRNOG00000013089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000032499 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074800 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029757 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085487 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.190 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro CAP-Gly_dom_sf UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/TrEMBL
  FHA_dom UniProtKB/TrEMBL
  KIF13B UniProtKB/TrEMBL
  KIF1B UniProtKB/TrEMBL
  Kinesin-like UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_domain UniProtKB/TrEMBL
KEGG Report rno:305967 UniProtKB/TrEMBL
NCBI Gene 305967 ENTREZGENE
PANTHER PTHR10398:SF3 UniProtKB/TrEMBL
Pfam CAP_GLY UniProtKB/TrEMBL
  DUF3694 UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
  KIF1B UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
PhenoGen Kif13b PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE CAP_GLY_1 UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
SMART CAP_GLY UniProtKB/TrEMBL
  KISc UniProtKB/TrEMBL
Superfamily-SCOP CAP-Gly_domain UniProtKB/TrEMBL
  SMAD_FHA UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniGene Rn.212960 ENTREZGENE
UniProt A0A0G2K8Z9_RAT UniProtKB/TrEMBL
  Q70AM4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1LRB4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Kif13b  kinesin family member 13B  kif13B  kinesin 13B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-14 kif13B  kinesin 13B      Symbol and Name status set to provisional 70820 PROVISIONAL