Rabl6 (RAB, member RAS oncogene family like 6) - Rat Genome Database

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Gene: Rabl6 (RAB, member RAS oncogene family like 6) Heterocephalus glaber
Analyze
Symbol: Rabl6
Name: RAB, member RAS oncogene family like 6
RGD ID: 18912663
Description: ENCODES a protein that exhibits GTP binding (inferred); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab-like protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,009,270 - 1,028,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,008,723 - 1,029,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)
cytoplasm  (ISO)
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rabl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,009,270 - 1,028,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,008,723 - 1,029,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RABL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,807,948 - 136,841,187 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,807,943 - 136,841,187 (+)EnsemblGRCh38hg38GRCh38
GRCh379139,702,400 - 139,735,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,822,195 - 138,855,460 (+)NCBINCBI36Build 36hg18NCBI36
Build 349136,978,210 - 137,011,476NCBI
Celera9110,216,142 - 110,249,429 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,161,664 - 109,194,942 (+)NCBIHuRef
CHM1_19139,850,905 - 139,884,360 (+)NCBICHM1_1
T2T-CHM13v2.09149,042,110 - 149,075,389 (+)NCBIT2T-CHM13v2.0
Rabl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,473,029 - 25,498,493 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,473,030 - 25,498,533 (-)EnsemblGRCm39 Ensembl
GRCm38225,583,017 - 25,608,481 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,583,018 - 25,608,521 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,438,538 - 25,463,966 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,405,027 - 25,430,455 (-)NCBIMGSCv36mm8
Celera225,311,207 - 25,336,645 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.46NCBI
Rabl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,800,802 - 28,826,722 (-)NCBIGRCr8
mRatBN7.238,402,666 - 8,428,588 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,402,672 - 8,428,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,507,841 - 11,533,746 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,094,067 - 20,119,972 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,283,913 - 18,309,819 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,806,777 - 2,832,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,806,777 - 2,832,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,788,190 - 2,814,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,754,687 - 3,780,607 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,754,691 - 3,777,741 (-)NCBI
Celera33,227,617 - 3,253,537 (-)NCBICelera
Cytogenetic Map3p13NCBI
Rabl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,904,958 - 4,922,599 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,904,659 - 4,923,225 (+)NCBIChiLan1.0ChiLan1.0
RABL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,561,439 - 2,593,866 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,563,774 - 2,596,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,865,764 - 107,898,073 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,836,671 - 136,867,298 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,849,527 - 136,868,545 (+)Ensemblpanpan1.1panPan2
RABL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,746,363 - 48,767,529 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,594,845 - 48,770,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,959,975 - 47,981,289 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,624,520 - 49,645,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,624,055 - 49,645,881 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,400,620 - 48,421,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,699,325 - 48,720,626 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,746,295 - 48,767,610 (-)NCBIUU_Cfam_GSD_1.0
Rabl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,272,660 - 202,299,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,075,218 - 1,102,404 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,075,556 - 1,102,404 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,920,698 - 313,929,670 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,348,082 - 1,379,779 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,348,742 - 1,379,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,894,402 - 3,927,277 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016828   ⟹   ENSHGLP00000016657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247601,009,270 - 1,028,929 (-)Ensembl
RefSeq Acc Id: XM_004848849   ⟹   XP_004848906
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,008,723 - 1,029,070 (-)NCBI
RefSeq Acc Id: XM_021261655   ⟹   XP_021117314
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,008,723 - 1,021,363 (-)NCBI
RefSeq Acc Id: XM_021261656   ⟹   XP_021117315
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,008,723 - 1,028,342 (-)NCBI
RefSeq Acc Id: XM_021261657   ⟹   XP_021117316
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,008,723 - 1,028,342 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004848906 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117314 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117315 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117316 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016657
  ENSHGLP00000036425
  ENSHGLP00100045104
RefSeq Acc Id: XP_004848906   ⟸   XM_004848849
- Peptide Label: isoform X1
- UniProtKB: A0A0N8ET54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021117316   ⟸   XM_021261657
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021117315   ⟸   XM_021261656
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021117314   ⟸   XM_021261655
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000016657   ⟸   ENSHGLT00000016828


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011916 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100011522 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016828 ENTREZGENE
  ENSHGLT00000080690 UniProtKB/TrEMBL
  ENSHGLT00100075368 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  RABL6 UniProtKB/TrEMBL
KEGG Report hgl:101711527 UniProtKB/TrEMBL
NCBI Gene Rabl6 ENTREZGENE
PANTHER PTHR14932 UniProtKB/TrEMBL
  RAB-LIKE PROTEIN 6 UniProtKB/TrEMBL
Pfam Roc UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0N8ET54 ENTREZGENE, UniProtKB/TrEMBL