Rabl6 (RAB, member RAS oncogene family-like 6) - Rat Genome Database

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Gene: Rabl6 (RAB, member RAS oncogene family-like 6) Mus musculus
Analyze
Symbol: Rabl6
Name: RAB, member RAS oncogene family-like 6
RGD ID: 1316913
MGI Page MGI
Description: Predicted to enable GTP binding activity. Predicted to be located in centrosome and cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; hemolymphoid system gland; and nervous system. Orthologous to human RABL6 (RAB, member RAS oncogene family like 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B230208H17Rik; GTP-binding protein Parf; parf; putative GTP-binding protein Parf; RAB, member of RAS oncogene family-like 6; rab-like protein 1; rab-like protein 6; Rbe; Rbel; Rbel1; Rbel1a; Rbel1b; RP23-464C2.8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,473,029 - 25,498,493 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,473,030 - 25,498,533 (-)EnsemblGRCm39 Ensembl
GRCm38225,583,017 - 25,608,481 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,583,018 - 25,608,521 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,438,538 - 25,463,966 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,405,027 - 25,430,455 (-)NCBIMGSCv36mm8
Celera225,311,207 - 25,336,645 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)
cytoplasm  (ISO)
cytosol  (IBA,ISO)
nucleus  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16582619  
PMID:16602821   PMID:17962191   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23572512   PMID:24194600   PMID:27626380   PMID:30196744   PMID:31040226   PMID:32325033  
PMID:34199469  


Genomics

Comparative Map Data
Rabl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,473,029 - 25,498,493 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,473,030 - 25,498,533 (-)EnsemblGRCm39 Ensembl
GRCm38225,583,017 - 25,608,481 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,583,018 - 25,608,521 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,438,538 - 25,463,966 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,405,027 - 25,430,455 (-)NCBIMGSCv36mm8
Celera225,311,207 - 25,336,645 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.46NCBI
RABL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,807,948 - 136,841,187 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,807,943 - 136,841,187 (+)EnsemblGRCh38hg38GRCh38
GRCh379139,702,400 - 139,735,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,822,195 - 138,855,460 (+)NCBINCBI36Build 36hg18NCBI36
Build 349136,978,210 - 137,011,476NCBI
Celera9110,216,142 - 110,249,429 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,161,664 - 109,194,942 (+)NCBIHuRef
CHM1_19139,850,905 - 139,884,360 (+)NCBICHM1_1
T2T-CHM13v2.09149,042,110 - 149,075,389 (+)NCBIT2T-CHM13v2.0
Rabl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,800,802 - 28,826,722 (-)NCBIGRCr8
mRatBN7.238,402,666 - 8,428,588 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,402,672 - 8,428,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,507,841 - 11,533,746 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,094,067 - 20,119,972 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,283,913 - 18,309,819 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,806,777 - 2,832,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,806,777 - 2,832,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,788,190 - 2,814,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,754,687 - 3,780,607 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,754,691 - 3,777,741 (-)NCBI
Celera33,227,617 - 3,253,537 (-)NCBICelera
Cytogenetic Map3p13NCBI
Rabl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,904,958 - 4,922,599 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,904,659 - 4,923,225 (+)NCBIChiLan1.0ChiLan1.0
RABL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,561,439 - 2,593,866 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,563,774 - 2,596,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,865,764 - 107,898,073 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,836,671 - 136,867,298 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,849,527 - 136,868,545 (+)Ensemblpanpan1.1panPan2
RABL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,746,363 - 48,767,529 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,594,845 - 48,770,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,959,975 - 47,981,289 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,624,520 - 49,645,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,624,055 - 49,645,881 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,400,620 - 48,421,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,699,325 - 48,720,626 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,746,295 - 48,767,610 (-)NCBIUU_Cfam_GSD_1.0
Rabl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,272,660 - 202,299,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,075,218 - 1,102,404 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,075,556 - 1,102,404 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,920,698 - 313,929,670 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RABL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,348,082 - 1,379,779 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,348,742 - 1,379,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,894,402 - 3,927,277 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,009,270 - 1,028,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,008,723 - 1,029,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabl6
916 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1670
Count of miRNA genes:601
Interacting mature miRNAs:752
Transcripts:ENSMUST00000058137, ENSMUST00000128942, ENSMUST00000135084, ENSMUST00000140635, ENSMUST00000140778, ENSMUST00000140785, ENSMUST00000143855, ENSMUST00000146012, ENSMUST00000150206
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK045520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX514513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY130272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000058137   ⟹   ENSMUSP00000058746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,473,030 - 25,498,533 (-)Ensembl
GRCm38.p6 Ensembl225,583,018 - 25,608,521 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,474,147 - 25,475,072 (-)Ensembl
GRCm38.p6 Ensembl225,584,135 - 25,585,060 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,475,201 - 25,475,835 (-)Ensembl
GRCm38.p6 Ensembl225,585,189 - 25,585,823 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,477,539 - 25,498,497 (-)Ensembl
GRCm38.p6 Ensembl225,587,527 - 25,608,485 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,477,457 - 25,479,171 (-)Ensembl
GRCm38.p6 Ensembl225,587,445 - 25,589,159 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,486,500 - 25,498,468 (-)Ensembl
GRCm38.p6 Ensembl225,596,488 - 25,608,456 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,475,686 - 25,477,319 (-)Ensembl
GRCm38.p6 Ensembl225,585,674 - 25,587,307 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146012
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,474,123 - 25,498,477 (-)Ensembl
GRCm38.p6 Ensembl225,584,111 - 25,608,465 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,474,123 - 25,480,384 (-)Ensembl
GRCm38.p6 Ensembl225,584,111 - 25,590,372 (-)Ensembl
RefSeq Acc Id: NM_001024616   ⟹   NP_001019787
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,473,029 - 25,498,493 (-)NCBI
GRCm38225,583,017 - 25,608,481 (-)NCBI
MGSCv37225,438,538 - 25,463,966 (-)RGD
Celera225,311,207 - 25,336,645 (-)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001019787   ⟸   NM_001024616
- UniProtKB: Q8BFS4 (UniProtKB/Swiss-Prot),   Q6PDP8 (UniProtKB/Swiss-Prot),   Q3TRU4 (UniProtKB/Swiss-Prot),   Q3TAT5 (UniProtKB/Swiss-Prot),   A2AJB0 (UniProtKB/Swiss-Prot),   Q8CGJ9 (UniProtKB/Swiss-Prot),   Q5U3K5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000058746   ⟸   ENSMUST00000058137

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U3K5-F1-model_v2 AlphaFold Q5U3K5 1-725 view protein structure

Promoters
RGD ID:6832565
Promoter ID:MM_KWN:28175
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000029142
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,440,326 - 25,441,427 (-)MPROMDB
RGD ID:6832564
Promoter ID:MM_KWN:28176
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Lung,   Spleen
Transcripts:OTTMUST00000029141
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,441,204 - 25,441,704 (-)MPROMDB
RGD ID:6832571
Promoter ID:MM_KWN:28177
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000029139,   OTTMUST00000029140,   UC008ISS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,442,501 - 25,446,722 (-)MPROMDB
RGD ID:6832569
Promoter ID:MM_KWN:28179
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000029134,   OTTMUST00000029137,   OTTMUST00000029138,   UC008IST.1,   UC008ISU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,463,699 - 25,464,199 (-)MPROMDB
RGD ID:6876624
Promoter ID:EPDNEW_M1763
Type:single initiation site
Name:Rabl6_2
Description:Mus musculus RAB, member RAS oncogene family-like 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1764  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,607,930 - 25,607,990EPDNEW
RGD ID:6876626
Promoter ID:EPDNEW_M1764
Type:initiation region
Name:Rabl6_1
Description:Mus musculus RAB, member RAS oncogene family-like 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1763  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,608,455 - 25,608,515EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442633 AgrOrtholog
Ensembl Genes ENSMUSG00000015087 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058137 ENTREZGENE
  ENSMUST00000058137.9 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  RABL6 UniProtKB/Swiss-Prot
KEGG Report mmu:227624 UniProtKB/Swiss-Prot
MGD MGI:2442633 ENTREZGENE
NCBI Gene 227624 ENTREZGENE
PANTHER PTHR14932 UniProtKB/Swiss-Prot
  RAB-LIKE PROTEIN 6 UniProtKB/Swiss-Prot
Pfam Roc UniProtKB/Swiss-Prot
PhenoGen Rabl6 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot
PROSITE RAB UniProtKB/Swiss-Prot
SMART RAB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A2AJB0 ENTREZGENE
  Q3TAT5 ENTREZGENE
  Q3TRU4 ENTREZGENE
  Q5U3K5 ENTREZGENE
  Q6PDP8 ENTREZGENE
  Q8BFS4 ENTREZGENE
  Q8CGJ9 ENTREZGENE
  RABL6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AJB0 UniProtKB/Swiss-Prot
  Q3TAT5 UniProtKB/Swiss-Prot
  Q3TRU4 UniProtKB/Swiss-Prot
  Q6PDP8 UniProtKB/Swiss-Prot
  Q8BFS4 UniProtKB/Swiss-Prot
  Q8CGJ9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-30 Rabl6  RAB, member RAS oncogene family-like 6    RAB, member of RAS oncogene family-like 6  Symbol and/or name change 5135510 APPROVED
2012-07-10 Rabl6  RAB, member of RAS oncogene family-like 6  B230208H17Rik  RIKEN cDNA B230208H17 gene  Symbol and/or name change 5135510 APPROVED