Pm20d1 (peptidase M20 domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pm20d1 (peptidase M20 domain containing 1) Heterocephalus glaber
Analyze
Symbol: Pm20d1
Name: peptidase M20 domain containing 1
RGD ID: 18912450
Description: ENCODES a protein that exhibits carboxypeptidase activity (inferred); hydrolase activity (inferred); hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (inferred); INVOLVED IN adaptive thermogenesis (ortholog); energy homeostasis (ortholog); lipid metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N-fatty-acyl-amino acid synthase/hydrolase PM20D1; Putative carboxypeptidase PM20D1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,408,689 - 5,432,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,406,363 - 5,428,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Pm20d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,408,689 - 5,432,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,406,363 - 5,428,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PM20D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,828,025 - 205,850,132 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,828,025 - 205,850,132 (-)EnsemblGRCh38hg38GRCh38
GRCh371205,797,153 - 205,819,260 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361204,063,776 - 204,085,868 (-)NCBINCBI36Build 36hg18NCBI36
Celera1178,933,498 - 178,955,670 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1176,961,776 - 176,983,237 (-)NCBIHuRef
CHM1_11207,220,641 - 207,242,775 (-)NCBICHM1_1
T2T-CHM13v2.01205,092,679 - 205,114,789 (-)NCBIT2T-CHM13v2.0
Pm20d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,725,122 - 131,749,210 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,725,119 - 131,749,211 (+)EnsemblGRCm39 Ensembl
GRCm381131,797,385 - 131,821,472 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,797,381 - 131,821,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,693,972 - 133,714,692 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,624,944 - 133,649,018 (+)NCBIMGSCv36mm8
Celera1134,401,882 - 134,422,608 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.19NCBI
Pm20d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,790,161 - 45,812,206 (+)NCBIGRCr8
mRatBN7.21343,237,954 - 43,259,999 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,237,971 - 43,259,999 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,841,357 - 45,863,527 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,129,507 - 47,151,675 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,394,184 - 44,416,388 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,575,094 - 48,596,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,575,091 - 48,596,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,650,960 - 53,670,855 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,735,202 - 44,755,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1343,576,159 - 43,597,847 (+)NCBICelera
Cytogenetic Map13q13NCBI
Pm20d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,518,526 - 41,544,348 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,522,800 - 41,544,332 (-)NCBIChiLan1.0ChiLan1.0
PM20D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,519,454 - 43,541,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,484,967 - 43,508,103 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,437,045 - 181,459,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,720,642 - 185,742,757 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,720,642 - 185,742,757 (-)Ensemblpanpan1.1panPan2
PM20D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,247,645 - 2,270,286 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,250,272 - 2,270,653 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,343,134 - 2,362,931 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,247,675 - 2,267,472 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,247,684 - 2,267,765 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,241,768 - 2,261,562 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,633,458 - 2,653,227 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,834,108 - 2,854,142 (-)NCBIUU_Cfam_GSD_1.0
Pm20d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,370,573 - 69,390,938 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,610,834 - 6,631,331 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,610,862 - 6,631,220 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PM20D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1966,522,015 - 66,550,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,788,453 - 72,816,829 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PM20D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,498,460 - 23,521,233 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,498,845 - 23,520,637 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,196,498 - 24,216,762 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027287   ⟹   ENSHGLP00000027047
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248075,408,689 - 5,432,131 (+)Ensembl
RefSeq Acc Id: XM_013078627   ⟹   XP_012934081
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248075,406,363 - 5,428,392 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012934081 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13861 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027047
  ENSHGLP00100053522
GenBank Protein JAO00018 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012934081   ⟸   XM_013078627
- UniProtKB: G5BX50 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000027047   ⟸   ENSHGLT00000027287


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019232 Ensembl, ENTREZGENE
  ENSHGLG00100011965 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000027287 ENTREZGENE
  ENSHGLT00100093064 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.900 UniProtKB/TrEMBL
  3.30.70.360 UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro Bact_exopeptidase_dim_dom UniProtKB/TrEMBL
  Pept_M20A UniProtKB/TrEMBL
  Peptidase_M20 UniProtKB/TrEMBL
  Peptidase_M20_dimer UniProtKB/TrEMBL
KEGG Report hgl:101700861 UniProtKB/TrEMBL
NCBI Gene Pm20d1 ENTREZGENE
PANTHER N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1 UniProtKB/TrEMBL
  N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1 UniProtKB/TrEMBL
Pfam M20_dimer UniProtKB/TrEMBL
  Peptidase_M20 UniProtKB/TrEMBL
Superfamily-SCOP SSF55031 UniProtKB/TrEMBL
  Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt G5BX50 ENTREZGENE, UniProtKB/TrEMBL