Usp20 (ubiquitin specific peptidase 20) - Rat Genome Database

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Gene: Usp20 (ubiquitin specific peptidase 20) Heterocephalus glaber
Analyze
Symbol: Usp20
Name: ubiquitin specific peptidase 20
RGD ID: 18911867
Description: ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of autophagy (ortholog); ASSOCIATED WITH primary coenzyme Q10 deficiency 7 (ortholog); FOUND IN centrosome (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 20
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,568,761 - 5,594,510 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,568,763 - 5,594,519 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Usp20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,568,761 - 5,594,510 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,568,763 - 5,594,519 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
USP20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389129,835,458 - 129,881,828 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9129,834,698 - 129,881,828 (+)EnsemblGRCh38hg38GRCh38
GRCh379132,597,737 - 132,644,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,637,570 - 131,683,928 (+)NCBINCBI36Build 36hg18NCBI36
Build 349129,677,302 - 129,723,661NCBI
Celera9103,248,726 - 103,295,216 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9102,196,523 - 102,243,074 (+)NCBIHuRef
CHM1_19132,746,720 - 132,793,117 (+)NCBICHM1_1
T2T-CHM13v2.09142,040,029 - 142,086,556 (+)NCBIT2T-CHM13v2.0
Usp20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,872,291 - 30,912,667 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,872,291 - 30,913,598 (+)EnsemblGRCm39 Ensembl
GRCm38230,982,279 - 31,022,655 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,982,279 - 31,023,586 (+)EnsemblGRCm38mm10GRCm38
MGSCv37230,837,799 - 30,878,175 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36230,818,051 - 30,845,595 (+)NCBIMGSCv36mm8
Celera230,688,074 - 30,728,467 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.77NCBI
Usp20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,670,613 - 34,704,156 (+)NCBIGRCr8
mRatBN7.2314,272,737 - 14,306,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,272,908 - 14,306,409 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx317,345,478 - 17,378,966 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,930,477 - 25,963,967 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,177,762 - 24,211,223 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,822,586 - 9,856,057 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,822,580 - 9,856,057 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,181,259 - 15,214,732 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,048,393 - 10,080,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,943,606 - 9,977,231 (+)NCBI
Celera39,031,454 - 9,063,927 (+)NCBICelera
Cytogenetic Map3p12NCBI
Usp20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495551342,809 - 70,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495551343,601 - 70,714 (+)NCBIChiLan1.0ChiLan1.0
USP20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,467,330 - 9,513,818 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,469,674 - 9,516,162 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09100,962,851 - 101,009,326 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,620,132 - 129,666,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9129,621,642 - 129,666,713 (+)Ensemblpanpan1.1panPan2
USP20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,966,180 - 54,009,312 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,966,183 - 54,009,317 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,163,042 - 53,206,314 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0954,863,745 - 54,906,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,863,743 - 54,906,925 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1953,641,038 - 53,684,206 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,963,134 - 54,006,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,056,181 - 54,099,449 (-)NCBIUU_Cfam_GSD_1.0
Usp20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,261,923 - 197,300,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,044,073 - 17,069,104 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,030,397 - 17,069,165 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,995,520 - 270,086,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,995,532 - 270,037,499 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,892,891 - 303,935,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1128,256,835 - 8,301,063 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl128,258,365 - 8,301,020 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660797,139,293 - 7,185,490 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016132   ⟹   ENSHGLP00000015965
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247605,568,761 - 5,594,510 (-)Ensembl
RefSeq Acc Id: XM_004849130   ⟹   XP_004849187
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247605,568,763 - 5,594,519 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849187 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015965
Reference Protein Sequences
RefSeq Acc Id: XP_004849187   ⟸   XM_004849130
- UniProtKB: G5ASB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015965   ⟸   ENSHGLT00000016132


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011412 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016132 ENTREZGENE
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
  DUSP-like UniProtKB/TrEMBL
  Zinc/RING finger domain, C3HC4 (zinc finger) UniProtKB/TrEMBL
InterPro DUSP-like_sf UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19_DUSP UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_UBP UniProtKB/TrEMBL
NCBI Gene Usp20 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 UniProtKB/TrEMBL
Pfam DUSP UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
  zf-UBP UniProtKB/TrEMBL
PROSITE DUSP UniProtKB/TrEMBL
  USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
  ZF_UBP UniProtKB/TrEMBL
SMART DUSP UniProtKB/TrEMBL
  ZnF_UBP UniProtKB/TrEMBL
Superfamily-SCOP Cysteine proteinases UniProtKB/TrEMBL
  DUSP-like UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt G5ASB5 ENTREZGENE, UniProtKB/TrEMBL