Lrrc41 (leucine rich repeat containing 41) - Rat Genome Database

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Gene: Lrrc41 (leucine rich repeat containing 41) Heterocephalus glaber
Analyze
Symbol: Lrrc41
Name: leucine rich repeat containing 41
RGD ID: 18911794
Description: ENCODES a protein that exhibits identical protein binding (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); hereditary breast ovarian cancer syndrome (ortholog); non-Hodgkin lymphoma (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat-containing protein 41
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,191,934 - 2,217,347 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,193,881 - 2,231,424 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lrrc41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,191,934 - 2,217,347 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,193,881 - 2,231,424 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LRRC41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,277,462 - 46,303,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,261,196 - 46,303,616 (-)EnsemblGRCh38hg38GRCh38
GRCh37146,743,134 - 46,769,288 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,516,659 - 46,541,625 (-)NCBINCBI36Build 36hg18NCBI36
Celera145,031,452 - 45,056,418 (-)NCBICelera
Cytogenetic Map1p34.1-p33NCBI
HuRef144,859,915 - 44,884,883 (-)NCBIHuRef
CHM1_1146,861,090 - 46,886,063 (-)NCBICHM1_1
T2T-CHM13v2.0146,154,683 - 46,180,838 (-)NCBIT2T-CHM13v2.0
Lrrc41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,932,466 - 115,954,306 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,932,466 - 115,954,240 (+)EnsemblGRCm39 Ensembl
GRCm384116,075,269 - 116,097,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,075,269 - 116,097,043 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,748,070 - 115,769,648 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,573,397 - 115,594,975 (+)NCBIMGSCv36mm8
Celera4114,813,605 - 114,835,193 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
Lrrc41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,791,256 - 134,812,177 (+)NCBIGRCr8
mRatBN7.25129,554,547 - 129,575,450 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,554,547 - 129,575,449 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,170,571 - 132,191,534 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,925,455 - 133,946,418 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,947,590 - 133,968,559 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05134,927,609 - 134,948,530 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,927,609 - 134,948,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,711,342 - 138,732,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,234,186 - 136,255,107 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15136,239,412 - 136,260,333 (-)NCBI
Celera5128,084,534 - 128,105,232 (+)NCBICelera
Cytogenetic Map5q35NCBI
Lrrc41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,976,259 - 11,996,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,976,259 - 11,996,588 (+)NCBIChiLan1.0ChiLan1.0
LRRC41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,504,556 - 180,529,822 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,646,140 - 179,671,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,581,638 - 45,606,649 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,936,187 - 46,961,523 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,936,651 - 46,961,242 (-)Ensemblpanpan1.1panPan2
LRRC41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,092,739 - 14,111,034 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,092,767 - 14,111,040 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,215,822 - 14,234,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,245,627 - 14,264,146 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,245,587 - 14,264,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11514,046,917 - 14,065,403 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,115,420 - 14,133,893 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,184,885 - 14,203,383 (+)NCBIUU_Cfam_GSD_1.0
Lrrc41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,491,569 - 61,514,578 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,315,488 - 27,339,288 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,316,351 - 27,338,895 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,134,690 - 165,156,911 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,134,682 - 165,156,915 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,614,027 - 152,636,352 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,485,038 - 86,510,688 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,485,106 - 86,512,989 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,476,452 - 30,502,278 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001911   ⟹   ENSHGLP00000001865
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249062,191,934 - 2,217,347 (-)Ensembl
RefSeq Acc Id: XM_004872951   ⟹   XP_004873008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249062,193,881 - 2,216,857 (-)NCBI
RefSeq Acc Id: XM_004872952   ⟹   XP_004873009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249062,193,881 - 2,216,603 (-)NCBI
RefSeq Acc Id: XM_021250785   ⟹   XP_021106444
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249062,193,881 - 2,231,424 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873008 (Get FASTA)   NCBI Sequence Viewer  
  XP_004873009 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106444 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001865
  ENSHGLP00100013688
GenBank Protein JAO03215 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021106444   ⟸   XM_021250785
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004873008   ⟸   XM_004872951
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JYG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004873009   ⟸   XM_004872952
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000001865   ⟸   ENSHGLT00000001911


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001422 Ensembl, ENTREZGENE
  ENSHGLG00100010122 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001911 ENTREZGENE
  ENSHGLT00100013843 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu_rpt_41 UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101719267 UniProtKB/TrEMBL
NCBI Gene Lrrc41 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 UniProtKB/TrEMBL
  PTHR15354 UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A0P6JYG2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SCI5_HETGA UniProtKB/TrEMBL