LRRC41 (leucine rich repeat containing 41)

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Gene: LRRC41 (leucine rich repeat containing 41) Canis lupus familiaris

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Symbol:

LRRC41

Name:

leucine rich repeat containing 41

RGD ID:

12377479

Description:

ENCODES a protein that exhibits identical protein binding (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); hereditary breast ovarian cancer syndrome (ortholog); non-Hodgkin lymphoma (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 41

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,092,739 - 14,111,034 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,092,767 - 14,111,040 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,215,822 - 14,234,089 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,245,627 - 14,264,146 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	14,245,587 - 14,264,146 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	14,046,917 - 14,065,403 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,115,420 - 14,133,893 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,184,885 - 14,203,383 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

hereditary breast ovarian cancer syndrome (ISO)

non-Hodgkin lymphoma (ISO)

primary ovarian insufficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LRRC41
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,092,739 - 14,111,034 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,092,767 - 14,111,040 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,215,822 - 14,234,089 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,245,627 - 14,264,146 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	14,245,587 - 14,264,146 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	14,046,917 - 14,065,403 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,115,420 - 14,133,893 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,184,885 - 14,203,383 (+)	NCBI		UU_Cfam_GSD_1.0

LRRC41
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	46,277,462 - 46,303,616 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	46,261,196 - 46,303,616 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	46,743,134 - 46,769,288 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	46,516,659 - 46,541,625 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	45,031,452 - 45,056,418 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1-p33	NCBI
HuRef	1	44,859,915 - 44,884,883 (-)	NCBI		HuRef
CHM1_1	1	46,861,090 - 46,886,063 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	46,154,683 - 46,180,838 (-)	NCBI		T2T-CHM13v2.0

Lrrc41
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	115,932,466 - 115,954,306 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	115,932,466 - 115,954,240 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	116,075,269 - 116,097,109 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,075,269 - 116,097,043 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	115,748,070 - 115,769,648 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	115,573,397 - 115,594,975 (+)	NCBI		MGSCv36	mm8
Celera	4	114,813,605 - 114,835,193 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.1	NCBI

Lrrc41
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	134,791,256 - 134,812,177 (+)	NCBI		GRCr8
mRatBN7.2	5	129,554,547 - 129,575,450 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	129,554,547 - 129,575,449 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	132,170,571 - 132,191,534 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	133,925,455 - 133,946,418 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	133,947,590 - 133,968,559 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	134,927,609 - 134,948,530 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	134,927,609 - 134,948,529 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	138,711,342 - 138,732,261 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	136,234,186 - 136,255,107 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	136,239,412 - 136,260,333 (-)	NCBI
Celera	5	128,084,534 - 128,105,232 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

Lrrc41
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	11,976,259 - 11,996,588 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	11,976,259 - 11,996,588 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC41
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	180,504,556 - 180,529,822 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	179,646,140 - 179,671,420 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	45,581,638 - 45,606,649 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,936,187 - 46,961,523 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,936,651 - 46,961,242 (-)	Ensembl	panpan1.1		panPan2

Lrrc41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	61,491,569 - 61,514,578 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	27,315,488 - 27,339,288 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	27,316,351 - 27,338,895 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC41
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	165,134,690 - 165,156,911 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	165,134,682 - 165,156,915 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	152,614,027 - 152,636,352 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC41
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	86,485,038 - 86,510,688 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	86,485,106 - 86,512,989 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	30,476,452 - 30,502,278 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc41
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	2,191,934 - 2,217,347 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	2,193,881 - 2,231,424 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LRRC41
146 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014119564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014119565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022427982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038495792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038495793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038558166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038558167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038622039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038622040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038687788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038687789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_845204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000006845 ⟹ ENSCAFP00000006338

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	15	14,092,767 - 14,111,040 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000073961 ⟹ ENSCAFP00000057296

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	15	14,095,137 - 14,111,040 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000089138 ⟹ ENSCAFP00000045509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	15	14,092,767 - 14,111,040 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000090511 ⟹ ENSCAFP00000063313

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	15	14,092,767 - 14,111,040 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845035150 ⟹ ENSCAFP00845027513

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	15	14,245,587 - 14,264,143 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845035268 ⟹ ENSCAFP00845027610

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	15	14,248,024 - 14,264,146 (+)	Ensembl

RefSeq Acc Id:

XM_014119564 ⟹ XP_013975039

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	15	14,094,740 - 14,111,034 (+)	NCBI
Dog10K_Boxer_Tasha	15	14,217,962 - 14,234,089 (+)	NCBI

Sequence:

show sequence

GAGTTTGGGGGGTTGGGCCTCCAGGAATAAGCCCGGAGACTCTGGAGACTGGCTAAAGAAGGCC
CAGGGATGCGGGAAGGCCCTTGGTGAGGTGGGGGTGGGGCGCTGGTCCTAAAGAGGCCCAAGTG
TCTTCCTGTAGTGGGAAAGACTGTTAGAAGTCCTCAAGCTGGTAGGGGGAGGGGATTGTGGAGG
CCCTATGCCAACAGCTGAGAGAAGAAGGGTCAGACTGACCCATGGGGAATAGGAGAAGCCTCAG
TGGAGCTGGGCAGGGGGCTCTGGAAAGTCCTGGGAAGTGGAAGAAGGCAGAGAAGACTGGCTGT
GTCAGCCTGGAACTTCTAGGATGCTAAACTTGGCTAGGAGGGAAGAGGACTGGGTGAGGAGGCC
TGGAGTAGAGAAGAGGAAGCATTAAAGGTATAGGCTGGAAAGACGGAAGAGCCTTGCTTAAGAA
GAATGGAGAAAAGAAGAGTGTGAATAACAGGGGATGAGAATCCCCAGTGGCTGTGAGAGAAAAT
GGCTAAACAGAGCAGATTGGAGGGGCAGAGGAGAAAGAGCTCCTATGGGCCTTGCCCAGCCCTC
CCAGGCCCAATACTCCAAAGCATCTTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGG
AAACTGCCCTCAAGAAAGGCCTCTCCACTCAGGCCATCTGGCGCCGACTATGGGATGAACTGAT
GAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACCTGTTGGCGAGCCAAGTTTATGGAGGCCTTT
TTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTCTGTGACCAGCGCT
TCTCACCTCTTCTGCATAGCTCCCGCCATGTCCGGCAGCTCACCATCTGCAATATGCTGCAGGG
TGCAACTGAGCTGGTGGCTGAGCCCAACCGCAGGGTTCTGGAGACCCTGGCCAGTTCCCTGCAC
ACCCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCTGC
TGCATCAGCTTATTCACCACGGGGCTGTCAGCCAGGTGTCGCTGTACTCCTGGCCTGTGCCTGA
GTCAGCCCTTTTCATCCTTATCCTCACCATGAGTGCTGGCTTCTGGCAGCCAGGCCCTGGTGGT
CCACCTTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTCCC
TCCTACTGGGCTCACGCCGGCCTCGCAGGGATGCTGCTGAGCGATGTGCTGCAGCCCTCATGGC
ATCCCGGCGGAAGAGTGAAGCCAAGCAGACAGCCAGAGCTGCACCCACCACCCGGGTAACACGC
CGGAGCACACAAGAGAGCCTGACAGCAGGTGGGACAGACCCTAAGAGGGATCTGCACCCTCCAG
CAACCTCCTACGAGGCTCCTGGCACCAAGCAACCACCCTCTGCTCCAGCCACCACCTCCTCTGC
CTCTGCCTCCTCTTCCACATCCTCATCCAAACGGGCTCCAGCTAGCTCAGCCCCACAGTCTAAG
CCGCTAAAGCGTTTTAAGCGAGCTGCAGGGAAGAAGGGTCCTCGCACCCGTCAGGGGTCCGGTG
CAGAGTCTGAAGACCTGTATGACTTTGTTTTTATTGTGGCTGGTGAGAAGGAGGATGGGGAAGA
GATGGAGATCGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTT
CCAGCACTGGAGGCCTCCCAGCGATTCCGCAGCATTTCCACCTTGGAGCTATTCACAGTTCCGC
TCTCCACAGAGGCGGCTCTGACACTGTGCCACCTGCTGAGCTCCTGGGTGTCTCTGGAGAGCCT
CACACTCTCCTATAATGGCCTGGGCTCTAACATCTTCCGCCTGCTGGACAGTCTGCGGGCCCTG
TCAGGCCAGGCTGGATGCCGCCTCCGTGCCCTGCATCTCAGTGATCTGTTCTCACCACTGCCCA
TCCTGGAGCTGACACGTGCCATTGTGCGAGCCCTGCCCCTACTGCGGGTCCTCTCTATTCGTGT
TGATCACCCCAGCCAGAGGGACAACCCTGCTGTACCAGGGAATGCAGGGCCCACTAGCCACATA
ATTGGAGATGAGGAGATACCAGAAAACTGCCTGGAACAGCTGGAGATGGGATTTCCACGGGGAG
CCCAACCAGCCCCACTGCTCTGCTCTGTACTGAAGGCCTCAGGTTCTCTGCAGCAGCTGTCTCT
GGATAGTGCCACCTTTGCCTCTCCCCAAGATTTTGGGCTTGTGTTACAGACACTCAAAGAGTAC
AACCTAGCCCTGAAGAGGCTGAGCTTCCATGACATGAATCTGGCTGACTGTCAGAGCGAGGTGC
TCTTTTTGCTACAGAATCTGACTCTTCAAGAGATTACCTTCTCCTTCTGCCGTCTCTTTGAGAA
GCGCCCGGCCCAATTTCTGCCTGAGATGGTTGCTGCTATGAAGGGCAACTCCACACTGAAGGGC
CTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCCTGGCAGATGTTTTCTCAG
AGGATTCATCCTCCTCTCTGTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGCCT
TCTGGAGTTCGCCAAGCGGCTGGAGCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTC
CAGAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATTCGGCGGCTCCGGGCCACTT
GCCACGTGGTTAGCGACTCGTGGGACTCATCCCAGGCCTTCGCAGATTATGTCAGCACTATGTG
ATGGGGCCCATGCTTCACAGGCCCATGCTCAGTACCATCAGCTTGCAGGGGCTGAGACCTGGGT
TGTGACATGGGCTGCCCAGAACTCCCAAACACCAGTTCTGTCTTTCTCTTTCTGCCACCTTTTT
TTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGGGACTCAGCAAAGGC
ATTTCCACAACTGGGTGTAGAGCCTTTGGGCCCCTTACCCCAGTACTCTGGGAACCTAGGCCAG
GTTACAGTGCTCATCAGTCACTGGGGACAGCTCACGTCCCCCTGCCTGAGGTTC

hide sequence

RefSeq Acc Id:

XM_038495792 ⟹ XP_038351720

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	15	14,046,917 - 14,065,403 (+)	NCBI

RefSeq Acc Id:

XM_038495793 ⟹ XP_038351721

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	15	14,049,057 - 14,065,403 (+)	NCBI

RefSeq Acc Id:

XM_038558166 ⟹ XP_038414094

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	15	14,184,885 - 14,203,383 (+)	NCBI

RefSeq Acc Id:

XM_038558167 ⟹ XP_038414095

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	15	14,187,025 - 14,203,383 (+)	NCBI

RefSeq Acc Id:

XM_038622039 ⟹ XP_038477967

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	15	14,115,420 - 14,133,893 (+)	NCBI

RefSeq Acc Id:

XM_038622040 ⟹ XP_038477968

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	15	14,117,560 - 14,133,893 (+)	NCBI

RefSeq Acc Id:

XM_038687788 ⟹ XP_038543716

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	15	14,245,627 - 14,264,146 (+)	NCBI

RefSeq Acc Id:

XM_038687789 ⟹ XP_038543717

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	15	14,247,767 - 14,264,146 (+)	NCBI

RefSeq Acc Id:

XM_845204 ⟹ XP_850297

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	15	14,092,740 - 14,111,034 (+)	NCBI
Dog10K_Boxer_Tasha	15	14,215,822 - 14,234,089 (+)	NCBI

Sequence:

show sequence

TACTACCGTCCATACGCAGGGGATGGGGGGAGCTGGTATTTGCACCTGAGGAGGATTTGCTAAG
AAATATCCCCTTCATGGCGCCGGGGCCAACTACGTCGATCTCCGAATTTATTTAAGATTTTGGC
TCCTAAGAGACTTGGGAAGAATTCGGATTTATTCGGTGTTCCTTTAGCGCAGTTCCCAGTATTA
CCCACATCGCTGATGAAACCGTCCTAACTGCTGACCTTTTCAAGATGGCGGCCCGCGGGCGCCA
CTCTCGGGCTCGCGCACCTCCCCAAGATGGCGGCGCCCGAGGCCTGGCGCGCCCGGAGTTGCTG
GTTCTGTGAGGTAGCGGCGGCAACGACCATGGAGGCCACGTCCCGGGAGGCGGCGCCAGCGAAG
AGCTCGGCCTCGGGCCCCAGCGCTCCCCCCGCCCTGTTCGAGCTGTGCGGGCGGGCGGTGAGCG
CCCATATGGGGGTTCTGGAGAGCGGGGTGTGGGCCCTCCCAGGCCCAATACTCCAAAGCATCTT
ACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCTCTCC
ACTCAGGCCATCTGGCGCCGACTATGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAA
GTGTGACCTGTTGGCGAGCCAAGTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCAT
TGATGTGTCTTCTGACAGGCGTCTCTGTGACCAGCGCTTCTCACCTCTTCTGCATAGCTCCCGC
CATGTCCGGCAGCTCACCATCTGCAATATGCTGCAGGGTGCAACTGAGCTGGTGGCTGAGCCCA
ACCGCAGGGTTCTGGAGACCCTGGCCAGTTCCCTGCACACCCTCAAGTTCCGCCACCTGCTGTT
CTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCTGCTGCATCAGCTTATTCACCACGGGGCT
GTCAGCCAGGTGTCGCTGTACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATCCTCA
CCATGAGTGCTGGCTTCTGGCAGCCAGGCCCTGGTGGTCCACCTTGCCGCCTCTGTGGAGAGGC
CTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTCCCTCCTACTGGGCTCACGCCGGCCTCGC
AGGGATGCTGCTGAGCGATGTGCTGCAGCCCTCATGGCATCCCGGCGGAAGAGTGAAGCCAAGC
AGACAGCCAGAGCTGCACCCACCACCCGGGTAACACGCCGGAGCACACAAGAGAGCCTGACAGC
AGGTGGGACAGACCCTAAGAGGGATCTGCACCCTCCAGCAACCTCCTACGAGGCTCCTGGCACC
AAGCAACCACCCTCTGCTCCAGCCACCACCTCCTCTGCCTCTGCCTCCTCTTCCACATCCTCAT
CCAAACGGGCTCCAGCTAGCTCAGCCCCACAGTCTAAGCCGCTAAAGCGTTTTAAGCGAGCTGC
AGGGAAGAAGGGTCCTCGCACCCGTCAGGGGTCCGGTGCAGAGTCTGAAGACCTGTATGACTTT
GTTTTTATTGTGGCTGGTGAGAAGGAGGATGGGGAAGAGATGGAGATCGGGGAAGTGGCTTGTG
GAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAGGCCTCCCAGCGATT
CCGCAGCATTTCCACCTTGGAGCTATTCACAGTTCCGCTCTCCACAGAGGCGGCTCTGACACTG
TGCCACCTGCTGAGCTCCTGGGTGTCTCTGGAGAGCCTCACACTCTCCTATAATGGCCTGGGCT
CTAACATCTTCCGCCTGCTGGACAGTCTGCGGGCCCTGTCAGGCCAGGCTGGATGCCGCCTCCG
TGCCCTGCATCTCAGTGATCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCCATTGTG
CGAGCCCTGCCCCTACTGCGGGTCCTCTCTATTCGTGTTGATCACCCCAGCCAGAGGGACAACC
CTGCTGTACCAGGGAATGCAGGGCCCACTAGCCACATAATTGGAGATGAGGAGATACCAGAAAA
CTGCCTGGAACAGCTGGAGATGGGATTTCCACGGGGAGCCCAACCAGCCCCACTGCTCTGCTCT
GTACTGAAGGCCTCAGGTTCTCTGCAGCAGCTGTCTCTGGATAGTGCCACCTTTGCCTCTCCCC
AAGATTTTGGGCTTGTGTTACAGACACTCAAAGAGTACAACCTAGCCCTGAAGAGGCTGAGCTT
CCATGACATGAATCTGGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCTACAGAATCTGACTCTT
CAAGAGATTACCTTCTCCTTCTGCCGTCTCTTTGAGAAGCGCCCGGCCCAATTTCTGCCTGAGA
TGGTTGCTGCTATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGG
GAATGCTGGCCTGCTGGCCCTGGCAGATGTTTTCTCAGAGGATTCATCCTCCTCTCTGTGTCAG
CTGGACATCAGTTCCAACTGCATCAAGCCAGATGGCCTTCTGGAGTTCGCCAAGCGGCTGGAGC
GCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAGAACTGGCTGGACCAGGATGCAGT
CACAGCCAGGGAAGCCATTCGGCGGCTCCGGGCCACTTGCCACGTGGTTAGCGACTCGTGGGAC
TCATCCCAGGCCTTCGCAGATTATGTCAGCACTATGTGATGGGGCCCATGCTTCACAGGCCCAT
GCTCAGTACCATCAGCTTGCAGGGGCTGAGACCTGGGTTGTGACATGGGCTGCCCAGAACTCCC
AAACACCAGTTCTGTCTTTCTCTTTCTGCCACCTTTTTTTCTCTTTTTTCCTTCTTCCCTTGCA
CTGAGGTCCTGGAGGCCTTGATGGGACTCAGCAAAGGCATTTCCACAACTGGGTGTAGAGCCTT
TGGGCCCCTTACCCCAGTACTCTGGGAACCTAGGCCAGGTTACAGTGCTCATCAGTCACTGGGG
ACAGCTCACGTCCCCCTGCCTGAGGTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_013975039	(Get FASTA)	NCBI Sequence Viewer
	XP_038351720	(Get FASTA)	NCBI Sequence Viewer
	XP_038351721	(Get FASTA)	NCBI Sequence Viewer
	XP_038414094	(Get FASTA)	NCBI Sequence Viewer
	XP_038414095	(Get FASTA)	NCBI Sequence Viewer
	XP_038477967	(Get FASTA)	NCBI Sequence Viewer
	XP_038477968	(Get FASTA)	NCBI Sequence Viewer
	XP_038543716	(Get FASTA)	NCBI Sequence Viewer
	XP_038543717	(Get FASTA)	NCBI Sequence Viewer
	XP_850297	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000006338.3
	ENSCAFP00000057296.1
	ENSCAFP00000063313.2
	ENSCAFP00030030859.1
	ENSCAFP00030030924.1
	ENSCAFP00040026074.1
	ENSCAFP00040026144.1
	ENSCAFP00845027513
	ENSCAFP00845027513.1
	ENSCAFP00845027610
	ENSCAFP00845027610.1

RefSeq Acc Id:	XP_850297 ⟸ XM_845204
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRC6 (UniProtKB/TrEMBL), A0A8C0NVM6 (UniProtKB/TrEMBL), A0A8I3P055 (UniProtKB/TrEMBL), A0A8C0KQE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPSAPPALFELCGRAVSAHMGVLESG VWALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKF MEAFFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLA SSLHTLKFRHLLFSDVAAQQSLRQLLHQLIHHGAVSQVSLYSWPVPESALFILILTMSAGFWQP GPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAKQTARAAPTT RVTRRSTQESLTAGGTDPKRDLHPPATSYEAPGTKQPPSAPATTSSASASSSTSSSKRAPASSA PQSKPLKRFKRAAGKKGPRTRQGSGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPS CLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLESLTLSYNGLGSNIFRLLDS LRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPAVPGNAGP TSHIIGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQT LKEYNLALKRLSFHDMNLADCQSEVLFLLQNLTLQEITFSFCRLFEKRPAQFLPEMVAAMKGNS TLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGH LRLFQNWLDQDAVTAREAIRRLRATCHVVSDSWDSSQAFADYVSTM hide sequence

RefSeq Acc Id:	XP_013975039 ⟸ XM_014119564
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0SSE2 (UniProtKB/TrEMBL), A0A8I3PAX6 (UniProtKB/TrEMBL), A0A8C0KQE6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKQSRLEGQRRKSSYGPCPALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDEL MKTRPSSLESVTCWRAKFMEAFFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQ GATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQLIHHGAVSQVSLYSWPVP ESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALM ASRRKSEAKQTARAAPTTRVTRRSTQESLTAGGTDPKRDLHPPATSYEAPGTKQPPSAPATTSS ASASSSTSSSKRAPASSAPQSKPLKRFKRAAGKKGPRTRQGSGAESEDLYDFVFIVAGEKEDGE EMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLES LTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIR VDHPSQRDNPAVPGNAGPTSHIIGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLS LDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLTLQEITFSFCRLFE KRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDG LLEFAKRLERWGRGAFGHLRLFQNWLDQDAVTAREAIRRLRATCHVVSDSWDSSQAFADYVSTM hide sequence

Ensembl Acc Id:

ENSCAFP00000057296 ⟸ ENSCAFT00000073961

Ensembl Acc Id:

ENSCAFP00000006338 ⟸ ENSCAFT00000006845

Ensembl Acc Id:

ENSCAFP00000045509 ⟸ ENSCAFT00000089138

Ensembl Acc Id:

ENSCAFP00000063313 ⟸ ENSCAFT00000090511

RefSeq Acc Id:	XP_038351720 ⟸ XM_038495792
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038351721 ⟸ XM_038495793
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038477967 ⟸ XM_038622039
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038477968 ⟸ XM_038622040
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038543716 ⟸ XM_038687788
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KRC6 (UniProtKB/TrEMBL), A0A8C0NVM6 (UniProtKB/TrEMBL), A0A8I3P055 (UniProtKB/TrEMBL), A0A8C0KQE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038543717 ⟸ XM_038687789
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0SSE2 (UniProtKB/TrEMBL), A0A8I3PAX6 (UniProtKB/TrEMBL), A0A8C0KQE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038414094 ⟸ XM_038558166
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KQE6 (UniProtKB/TrEMBL), A0A8C0KRC6 (UniProtKB/TrEMBL), A0A8C0NVM6 (UniProtKB/TrEMBL), A0A8I3P055 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038414095 ⟸ XM_038558167
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KQE6 (UniProtKB/TrEMBL), A0A8C0SSE2 (UniProtKB/TrEMBL), A0A8I3PAX6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845027610 ⟸ ENSCAFT00845035268

Ensembl Acc Id:

ENSCAFP00845027513 ⟸ ENSCAFT00845035150

Promoters

RGD ID:

13685901

Promoter ID:

EPDNEW_C3968

Type:

initiation region

Name:

LRRC41_1

Description:

leucine rich repeat containing 41

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	15	14,093,067 - 14,093,127	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000004263	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030019226	UniProtKB/TrEMBL
	ENSCAFG00040016288	UniProtKB/TrEMBL
	ENSCAFG00845019955	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000006845.5	UniProtKB/TrEMBL
	ENSCAFT00000073961.2	UniProtKB/TrEMBL
	ENSCAFT00000090511.2	UniProtKB/TrEMBL
	ENSCAFT00030035378.1	UniProtKB/TrEMBL
	ENSCAFT00030035455.1	UniProtKB/TrEMBL
	ENSCAFT00040030014.1	UniProtKB/TrEMBL
	ENSCAFT00040030089.1	UniProtKB/TrEMBL
	ENSCAFT00845035150	ENTREZGENE
	ENSCAFT00845035150.1	UniProtKB/TrEMBL
	ENSCAFT00845035268	ENTREZGENE
	ENSCAFT00845035268.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu_rpt_41	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
KEGG Report	cfa:608535	UniProtKB/TrEMBL
NCBI Gene	LRRC41	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41	UniProtKB/TrEMBL
	PTHR15354	UniProtKB/TrEMBL
SMART	LRR_RI	UniProtKB/TrEMBL
Superfamily-SCOP	RNI-like	UniProtKB/TrEMBL
UniProt	A0A8C0KQE6	ENTREZGENE
	A0A8C0KRC6	ENTREZGENE
	A0A8C0NVM6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0RNT9_CANLF	UniProtKB/TrEMBL
	A0A8C0SSE2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P055	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PAX6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TEU9_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:42798	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar