Prdm4 (PR/SET domain 4) - Rat Genome Database

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Gene: Prdm4 (PR/SET domain 4) Heterocephalus glaber
Analyze
Symbol: Prdm4
Name: PR/SET domain 4
RGD ID: 18911278
Description: ENCODES a protein that exhibits death receptor binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); cellular response to nutrient (ortholog); negative regulation of cell growth (ortholog); FOUND IN cytoplasm (ortholog); histone methyltransferase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PR domain zinc finger protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247502,076,466 - 2,097,766 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247502,077,130 - 2,106,331 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Prdm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247502,076,466 - 2,097,766 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247502,077,130 - 2,106,331 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PRDM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812107,732,871 - 107,761,137 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12107,732,871 - 107,761,272 (-)EnsemblGRCh38hg38GRCh38
GRCh3712108,126,648 - 108,154,914 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612106,650,773 - 106,679,044 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412106,629,110 - 106,657,381NCBI
Celera12107,792,201 - 107,820,465 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12105,186,879 - 105,215,475 (-)NCBIHuRef
CHM1_112108,092,594 - 108,120,863 (-)NCBICHM1_1
T2T-CHM13v2.012107,696,363 - 107,724,788 (-)NCBIT2T-CHM13v2.0
Prdm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391085,727,828 - 85,752,958 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1085,727,830 - 85,753,006 (-)EnsemblGRCm39 Ensembl
GRCm381085,891,964 - 85,917,152 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1085,891,966 - 85,917,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv371085,354,711 - 85,379,690 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361085,321,765 - 85,346,744 (-)NCBIMGSCv36mm8
Celera1087,866,535 - 87,891,563 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.75NCBI
Prdm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8719,841,560 - 19,868,224 (+)NCBIGRCr8
mRatBN7.2717,953,832 - 17,980,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl717,954,019 - 17,980,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx719,920,808 - 19,941,597 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0722,084,199 - 22,103,966 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0721,860,454 - 21,881,239 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0723,959,932 - 23,986,535 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl723,960,378 - 23,985,525 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0724,109,460 - 24,136,615 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4720,096,859 - 20,117,628 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1720,110,929 - 20,131,701 (+)NCBI
Celera715,190,862 - 15,211,498 (+)NCBICelera
Cytogenetic Map7q13NCBI
Prdm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,336,199 - 41,353,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540541,335,019 - 41,354,625 (-)NCBIChiLan1.0ChiLan1.0
PRDM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210115,791,547 - 115,819,845 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112115,787,944 - 115,816,241 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012105,303,009 - 105,331,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112108,699,444 - 108,727,444 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12108,699,444 - 108,727,304 (-)Ensemblpanpan1.1panPan2
PRDM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11031,071,998 - 31,100,008 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1031,072,297 - 31,098,636 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1031,056,699 - 31,084,641 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01031,916,430 - 31,944,338 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1031,916,780 - 31,944,338 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11031,655,923 - 31,683,803 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01031,945,006 - 31,972,913 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01032,131,601 - 32,159,592 (+)NCBIUU_Cfam_GSD_1.0
Prdm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494514,381,658 - 14,407,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364927,396,561 - 7,417,482 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364927,392,072 - 7,417,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRDM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl512,638,514 - 12,668,886 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1512,638,335 - 12,668,890 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2512,424,617 - 12,455,111 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRDM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111102,952,123 - 102,980,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11102,953,480 - 102,980,173 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037142,093,057 - 142,121,392 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013072250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021258360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001183472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001183475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002394938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01030316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01030317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000006367   ⟹   ENSHGLP00000006288
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247502,076,466 - 2,097,766 (+)Ensembl
RefSeq Acc Id: XM_013072250   ⟹   XP_012927704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,098,850 (+)NCBI
RefSeq Acc Id: XM_021258360   ⟹   XP_021114019
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,130 - 2,094,985 (+)NCBI
RefSeq Acc Id: XR_001183472
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_001183475
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394923
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394924
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394925
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394926
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394927
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394928
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394929
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394930
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394931
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394932
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394933
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394934
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394935
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394936
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,135 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394937
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,134 - 2,106,331 (+)NCBI
RefSeq Acc Id: XR_002394938
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247502,077,130 - 2,094,985 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012927704 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114019 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006288
GenBank Protein JAN97556 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021114019   ⟸   XM_021258360
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SZJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927704   ⟸   XM_013072250
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J0J6 (UniProtKB/TrEMBL),   A0AAX6QXS8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006288   ⟸   ENSHGLT00000006367


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004590 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006367 ENTREZGENE
Gene3D-CATH 2.170.270.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro PRDM4 UniProtKB/TrEMBL
  PRDM4_PR/SET UniProtKB/TrEMBL
  PRDM4_Znf_knuckle UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Prdm4 ENTREZGENE
PANTHER PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN 4 UniProtKB/TrEMBL
Pfam PRDM2_PR UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf_PR_Knuckle UniProtKB/TrEMBL
PIRSF PRDM4 UniProtKB/TrEMBL
PROSITE SET UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6J0J6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QXS8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SZJ2 ENTREZGENE, UniProtKB/TrEMBL