Mtrf1 (mitochondrial translation release factor 1) - Rat Genome Database

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Gene: Mtrf1 (mitochondrial translation release factor 1) Heterocephalus glaber
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Symbol: Mtrf1
Name: mitochondrial translation release factor 1
RGD ID: 18910463
Description: ENCODES a protein that exhibits translation release factor activity (inferred); translation release factor activity, codon specific (inferred); INVOLVED IN mitochondrial translational termination (inferred); translation (inferred); translational termination (inferred); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial translational release factor 1; Peptide chain release factor 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474813,849,188 - 13,897,601 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474813,849,117 - 13,898,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
mitochondrion  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Mtrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474813,849,188 - 13,897,601 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474813,849,117 - 13,898,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MTRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381341,216,369 - 41,312,038 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1341,216,369 - 41,263,577 (-)EnsemblGRCh38hg38GRCh38
GRCh371341,790,505 - 41,886,174 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361340,688,516 - 40,735,713 (-)NCBINCBI36Build 36hg18NCBI36
Build 341340,688,515 - 40,735,713NCBI
Celera1322,847,948 - 22,895,130 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1322,590,363 - 22,637,432 (-)NCBIHuRef
CHM1_11341,758,296 - 41,805,513 (-)NCBICHM1_1
T2T-CHM13v2.01340,435,512 - 40,531,181 (-)NCBIT2T-CHM13v2.0
Mtrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391479,635,205 - 79,672,626 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1479,635,212 - 79,661,027 (+)EnsemblGRCm39 Ensembl
GRCm381479,397,765 - 79,423,650 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1479,397,772 - 79,423,587 (+)EnsemblGRCm38mm10GRCm38
MGSCv371479,797,579 - 79,823,457 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361478,131,927 - 78,157,742 (+)NCBIMGSCv36mm8
Celera1476,897,806 - 76,923,692 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1442.63NCBI
Mtrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81561,185,958 - 61,213,783 (+)NCBIGRCr8
mRatBN7.21554,776,885 - 54,804,699 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1554,776,937 - 54,804,704 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1558,910,125 - 58,938,135 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01560,028,503 - 60,056,514 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01556,853,396 - 56,881,408 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01561,662,000 - 61,689,867 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,662,264 - 61,689,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,326,329 - 65,354,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1554,360,012 - 54,387,999 (+)NCBICelera
Cytogenetic Map15q12NCBI
Mtrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555184,937,921 - 4,971,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555184,937,921 - 4,971,365 (+)NCBIChiLan1.0ChiLan1.0
MTRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21440,738,747 - 40,788,552 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11331,830,583 - 31,892,114 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01322,424,083 - 22,473,485 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11341,013,655 - 41,063,765 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1341,013,549 - 41,063,765 (-)Ensemblpanpan1.1panPan2
MTRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,327,231 - 9,382,922 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,329,406 - 9,376,686 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha229,323,626 - 9,379,088 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0229,553,360 - 9,608,851 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl229,553,234 - 9,625,844 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1229,248,841 - 9,304,442 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0229,298,372 - 9,353,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,312,922 - 9,368,378 (+)NCBIUU_Cfam_GSD_1.0
Mtrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945151,511,450 - 151,552,092 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936667347,418 - 383,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936667347,617 - 388,221 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1125,603,809 - 25,639,177 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11125,603,784 - 25,638,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21126,579,771 - 26,610,471 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1319,475,036 - 19,547,363 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl319,474,000 - 19,519,267 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605724,676,723 - 24,764,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004455   ⟹   ENSHGLP00000004393
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474813,849,188 - 13,897,601 (+)Ensembl
RefSeq Acc Id: XM_021257909   ⟹   XP_021113568
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474813,849,125 - 13,898,156 (+)NCBI
RefSeq Acc Id: XM_021257910   ⟹   XP_021113569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474813,859,743 - 13,898,156 (+)NCBI
RefSeq Acc Id: XM_021257911   ⟹   XP_021113570
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474813,859,860 - 13,898,156 (+)NCBI
RefSeq Acc Id: XM_021257912   ⟹   XP_021113571
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474813,859,842 - 13,898,156 (+)NCBI
RefSeq Acc Id: XR_002394667
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474813,849,117 - 13,894,313 (+)NCBI
RefSeq Acc Id: XR_002394668
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474813,849,121 - 13,897,384 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021113568 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113569 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113570 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113571 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13046 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004393
  ENSHGLP00000036974
GenBank Protein JAN99512 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021113568   ⟸   XM_021257909
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SXT0 (UniProtKB/TrEMBL),   A0A0P6J5F6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113569   ⟸   XM_021257910
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SY81 (UniProtKB/TrEMBL),   G5BUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113571   ⟸   XM_021257912
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SZ36 (UniProtKB/TrEMBL),   G5BUT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113570   ⟸   XM_021257911
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SY81 (UniProtKB/TrEMBL),   G5BUT5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004393   ⟸   ENSHGLT00000004455


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004455 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00000071632 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.20 UniProtKB/TrEMBL
  3.30.70.1660 UniProtKB/TrEMBL
  6.10.140.1950 UniProtKB/TrEMBL
InterPro PCRF UniProtKB/TrEMBL
  Pep_chain_release_fac_I UniProtKB/TrEMBL
  Pep_chain_release_fac_I_sf UniProtKB/TrEMBL
  Prokaryotic/Mito_RF UniProtKB/TrEMBL
NCBI Gene Mtrf1 ENTREZGENE
PANTHER LD18447P UniProtKB/TrEMBL
  PEPTIDE CHAIN RELEASE FACTOR 1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam PCRF UniProtKB/TrEMBL
  RF-1 UniProtKB/TrEMBL
PROSITE RF_PROK_I UniProtKB/TrEMBL
SMART PCRF UniProtKB/TrEMBL
Superfamily-SCOP SSF75620 UniProtKB/TrEMBL
UniProt A0A0P6J5F6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SXT0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SY81 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SZ36 ENTREZGENE, UniProtKB/TrEMBL
  G5BUT5 ENTREZGENE, UniProtKB/TrEMBL