Synrg (synergin gamma) - Rat Genome Database

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Gene: Synrg (synergin gamma) Heterocephalus glaber
Analyze
Symbol: Synrg
Name: synergin gamma
RGD ID: 18910422
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN clathrin coat of trans-Golgi network vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,509,428 - 4,593,337 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,505,693 - 4,593,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Synrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,509,428 - 4,593,337 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,505,693 - 4,593,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SYNRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,514,807 - 37,609,418 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,514,807 - 37,609,472 (-)EnsemblGRCh38hg38GRCh38
GRCh371735,874,910 - 35,969,466 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,952,046 - 33,043,559 (-)NCBINCBI36Build 36hg18NCBI36
Build 341732,952,045 - 33,043,559NCBI
Celera1732,697,883 - 32,792,525 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,812,168 - 31,906,906 (-)NCBIHuRef
CHM1_11735,906,360 - 36,001,001 (-)NCBICHM1_1
T2T-CHM13v2.01738,501,491 - 38,596,398 (-)NCBIT2T-CHM13v2.0
Synrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,855,217 - 83,935,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,855,254 - 83,935,404 (+)EnsemblGRCm39 Ensembl
GRCm381183,964,390 - 84,044,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,964,428 - 84,044,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,777,930 - 83,855,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,780,666 - 83,858,284 (+)NCBIMGSCv36mm8
Celera1193,569,471 - 93,647,214 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.25NCBI
Synrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,346,154 - 69,428,714 (+)NCBIGRCr8
mRatBN7.21068,848,828 - 68,931,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,849,642 - 68,931,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,469,676 - 73,550,565 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,974,685 - 73,055,576 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,439,105 - 68,519,999 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,278,698 - 71,357,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01070,890,012 - 70,927,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01071,230,888 - 71,271,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,247,720 - 72,330,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,262,041 - 72,309,447 (+)NCBI
Celera1067,788,307 - 67,860,055 (+)NCBICelera
Cytogenetic Map10q26NCBI
Synrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451438,904 - 510,136 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955451439,205 - 510,675 (+)NCBIChiLan1.0ChiLan1.0
SYNRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,144,606 - 27,237,649 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,028,037 - 29,121,039 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,467,539 - 19,560,618 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,768,062 - 19,860,323 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,768,058 - 19,860,323 (+)Ensemblpanpan1.1panPan2
SYNRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,280,620 - 37,365,477 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,280,645 - 37,366,116 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,505,186 - 36,589,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,091,575 - 38,176,008 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,091,575 - 38,176,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,872,387 - 36,956,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,159,961 - 37,244,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,246,724 - 37,331,356 (-)NCBIUU_Cfam_GSD_1.0
Synrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490776,896 - 840,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,975,916 - 39,069,798 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,974,567 - 39,069,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,620,317 - 40,711,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,171,704 - 30,265,143 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,181,431 - 30,264,981 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666077893,668 - 991,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004870422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013067678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021248725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01095817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01095818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01095819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01095820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01095821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01095822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000006135   ⟹   ENSHGLP00000006060
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248714,509,428 - 4,593,337 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000006136   ⟹   ENSHGLP00000006061
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248714,509,428 - 4,593,337 (-)Ensembl
RefSeq Acc Id: XM_004870422   ⟹   XP_004870479
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_013067672   ⟹   XP_012923126
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,472 (-)NCBI
RefSeq Acc Id: XM_013067673   ⟹   XP_012923127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_013067674   ⟹   XP_012923128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_013067675   ⟹   XP_012923129
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_013067676   ⟹   XP_012923130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_013067677   ⟹   XP_012923131
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_013067678   ⟹   XP_012923132
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_021248720   ⟹   XP_021104379
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,076 (-)NCBI
RefSeq Acc Id: XM_021248721   ⟹   XP_021104380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_021248722   ⟹   XP_021104381
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,575,402 (-)NCBI
RefSeq Acc Id: XM_021248723   ⟹   XP_021104382
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,509,428 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_021248724   ⟹   XP_021104383
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,509,428 - 4,593,359 (-)NCBI
RefSeq Acc Id: XM_021248725   ⟹   XP_021104384
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248714,505,693 - 4,593,359 (-)NCBI
RefSeq Acc Id: XP_012923126   ⟸   XM_013067672
- Peptide Label: isoform X1
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104384   ⟸   XM_021248725
- Peptide Label: isoform X14
RefSeq Acc Id: XP_004870479   ⟸   XM_004870422
- Peptide Label: isoform X10
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923132   ⟸   XM_013067678
- Peptide Label: isoform X9
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923129   ⟸   XM_013067675
- Peptide Label: isoform X5
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923131   ⟸   XM_013067677
- Peptide Label: isoform X8
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923128   ⟸   XM_013067674
- Peptide Label: isoform X3
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923130   ⟸   XM_013067676
- Peptide Label: isoform X7
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104380   ⟸   XM_021248721
- Peptide Label: isoform X6
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923127   ⟸   XM_013067673
- Peptide Label: isoform X2
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104379   ⟸   XM_021248720
- Peptide Label: isoform X4
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104381   ⟸   XM_021248722
- Peptide Label: isoform X11
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104383   ⟸   XM_021248724
- Peptide Label: isoform X13
RefSeq Acc Id: XP_021104382   ⟸   XM_021248723
- Peptide Label: isoform X12
- UniProtKB: G5ARC6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006060   ⟸   ENSHGLT00000006135
Ensembl Acc Id: ENSHGLP00000006061   ⟸   ENSHGLT00000006136


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004431 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006135 ENTREZGENE
  ENSHGLT00000006136 ENTREZGENE
Gene3D-CATH 3.10.20.30 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Beta-grasp_dom_sf UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EH_dom UniProtKB/TrEMBL
  SYNRG UniProtKB/TrEMBL
  ThiS/MoaD-like UniProtKB/TrEMBL
NCBI Gene Synrg ENTREZGENE
PANTHER AP1 GAMMA SUBUNIT BINDING PROTEIN 1 UniProtKB/TrEMBL
  SYNERGIN GAMMA UniProtKB/TrEMBL
Pfam ThiS UniProtKB/TrEMBL
PROSITE PS50031 UniProtKB/TrEMBL
SMART SM00027 UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/TrEMBL
UniProt G5ARC6 ENTREZGENE, UniProtKB/TrEMBL