Synrg (synergin gamma) - Rat Genome Database

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Gene: Synrg (synergin gamma) Ictidomys tridecemlineatus
Analyze
Symbol: Synrg
Name: synergin gamma
RGD ID: 12694185
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN clathrin coat of trans-Golgi network vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synergin gamma, transcript variant X1; synergin gamma, transcript variant X10; synergin gamma, transcript variant X11; synergin gamma, transcript variant X12; synergin gamma, transcript variant X2; synergin gamma, transcript variant X3; synergin gamma, transcript variant X4; synergin gamma, transcript variant X5; synergin gamma, transcript variant X6; synergin gamma, transcript variant X7; synergin gamma, transcript variant X8; synergin gamma, transcript variant X9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490776,896 - 840,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Synrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490776,896 - 840,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,514,807 - 37,609,418 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,514,807 - 37,609,472 (-)EnsemblGRCh38hg38GRCh38
GRCh371735,874,910 - 35,969,466 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,952,046 - 33,043,559 (-)NCBINCBI36Build 36hg18NCBI36
Build 341732,952,045 - 33,043,559NCBI
Celera1732,697,883 - 32,792,525 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,812,168 - 31,906,906 (-)NCBIHuRef
CHM1_11735,906,360 - 36,001,001 (-)NCBICHM1_1
T2T-CHM13v2.01738,501,491 - 38,596,398 (-)NCBIT2T-CHM13v2.0
Synrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,855,217 - 83,935,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,855,254 - 83,935,404 (+)EnsemblGRCm39 Ensembl
GRCm381183,964,390 - 84,044,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,964,428 - 84,044,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,777,930 - 83,855,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,780,666 - 83,858,284 (+)NCBIMGSCv36mm8
Celera1193,569,471 - 93,647,214 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.25NCBI
Synrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,346,154 - 69,428,714 (+)NCBIGRCr8
mRatBN7.21068,848,828 - 68,931,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,849,642 - 68,931,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,469,676 - 73,550,565 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,974,685 - 73,055,576 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,439,105 - 68,519,999 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,278,698 - 71,357,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01070,890,012 - 70,927,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01071,230,888 - 71,271,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,247,720 - 72,330,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,262,041 - 72,309,447 (+)NCBI
Celera1067,788,307 - 67,860,055 (+)NCBICelera
Cytogenetic Map10q26NCBI
Synrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451438,904 - 510,136 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955451439,205 - 510,675 (+)NCBIChiLan1.0ChiLan1.0
SYNRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,144,606 - 27,237,649 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,028,037 - 29,121,039 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,467,539 - 19,560,618 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,768,062 - 19,860,323 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,768,058 - 19,860,323 (+)Ensemblpanpan1.1panPan2
SYNRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,280,620 - 37,365,477 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,280,645 - 37,366,116 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,505,186 - 36,589,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,091,575 - 38,176,008 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,091,575 - 38,176,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,872,387 - 36,956,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,159,961 - 37,244,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,246,724 - 37,331,356 (-)NCBIUU_Cfam_GSD_1.0
SYNRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,975,916 - 39,069,798 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,974,567 - 39,069,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,620,317 - 40,711,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,171,704 - 30,265,143 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,181,431 - 30,264,981 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666077893,668 - 991,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Synrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,509,428 - 4,593,337 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,505,693 - 4,593,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013357054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000002533   ⟹   ENSSTOP00000002266
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936490776,978 - 835,934 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036422   ⟹   ENSSTOP00000026990
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936490776,896 - 840,022 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000038350   ⟹   ENSSTOP00000028766
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936490776,978 - 835,934 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000042293   ⟹   ENSSTOP00000031835
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936490776,978 - 835,934 (+)Ensembl
RefSeq Acc Id: XM_013357054   ⟹   XP_013212508
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357055   ⟹   XP_013212509
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357057   ⟹   XP_013212511
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724032   ⟹   XP_021579707
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,111 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724033   ⟹   XP_021579708
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724036   ⟹   XP_021579711
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724038   ⟹   XP_021579713
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724039   ⟹   XP_021579714
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,111 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724040   ⟹   XP_021579715
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
SpeTri2.0NW_004936490776,939 - 836,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724041   ⟹   XP_021579716
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,111 (-)NCBI
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269114   ⟹   XP_040125048
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
RefSeq Acc Id: XM_040269115   ⟹   XP_040125049
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
RefSeq Acc Id: XM_040269116   ⟹   XP_040125050
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
RefSeq Acc Id: XM_040269117   ⟹   XP_040125051
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013212508 (Get FASTA)   NCBI Sequence Viewer  
  XP_013212509 (Get FASTA)   NCBI Sequence Viewer  
  XP_013212511 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579707 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579708 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579711 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579713 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579714 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579715 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579716 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125048 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125049 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125050 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125051 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002266.3
  ENSSTOP00000026990.1
  ENSSTOP00000028766.1
  ENSSTOP00000031835.1
GenBank Protein KAG3269440 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269441 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269442 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269443 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269444 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269445 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269446 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269447 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269448 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269449 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269450 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269451 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013212508   ⟸   XM_013357054
- Peptide Label: isoform X1
- UniProtKB: A0A287D0G9 (UniProtKB/TrEMBL),   I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212511   ⟸   XM_013357057
- Peptide Label: isoform X6
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212509   ⟸   XM_013357055
- Peptide Label: isoform X4
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579708   ⟸   XM_021724033
- Peptide Label: isoform X3
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579711   ⟸   XM_021724036
- Peptide Label: isoform X7
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579713   ⟸   XM_021724038
- Peptide Label: isoform X9
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579707   ⟸   XM_021724032
- Peptide Label: isoform X2
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579714   ⟸   XM_021724039
- Peptide Label: isoform X10
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579716   ⟸   XM_021724041
- Peptide Label: isoform X13
- UniProtKB: A0A287D5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579715   ⟸   XM_021724040
- Peptide Label: isoform X11
- UniProtKB: A0A287D5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125050   ⟸   XM_040269116
- Peptide Label: isoform X12
- UniProtKB: A0A287D5A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125051   ⟸   XM_040269117
- Peptide Label: isoform X14
- UniProtKB: A0A287D5A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125049   ⟸   XM_040269115
- Peptide Label: isoform X8
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125048   ⟸   XM_040269114
- Peptide Label: isoform X5
- UniProtKB: I3M0L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000002266   ⟸   ENSSTOT00000002533
RefSeq Acc Id: ENSSTOP00000026990   ⟸   ENSSTOT00000036422
RefSeq Acc Id: ENSSTOP00000028766   ⟸   ENSSTOT00000038350
RefSeq Acc Id: ENSSTOP00000031835   ⟸   ENSSTOT00000042293
Protein Domains
EH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002530 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002533.3 UniProtKB/TrEMBL
  ENSSTOT00000036422.1 UniProtKB/TrEMBL
  ENSSTOT00000038350.1 UniProtKB/TrEMBL
  ENSSTOT00000042293.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EH_dom UniProtKB/TrEMBL
  SYNRG UniProtKB/TrEMBL
NCBI Gene Synrg ENTREZGENE
PANTHER PTHR15463 UniProtKB/TrEMBL
  SYNERGIN GAMMA UniProtKB/TrEMBL
PROSITE PS50031 UniProtKB/TrEMBL
SMART SM00027 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287D0G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D5A9 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DE45_ICTTR UniProtKB/TrEMBL
  I3M0L7 ENTREZGENE, UniProtKB/TrEMBL