Shroom2 (shroom family member 2) - Rat Genome Database

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Gene: Shroom2 (shroom family member 2) Heterocephalus glaber
Analyze
Symbol: Shroom2
Name: shroom family member 2
RGD ID: 18910264
Description: ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell migration (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Meniere's disease (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Shroom2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Shroom2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SHROOM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X9,786,429 - 9,949,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX9,786,429 - 9,949,443 (+)EnsemblGRCh38hg38GRCh38
GRCh37X9,754,469 - 9,917,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X9,714,496 - 9,877,481 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X9,564,231 - 9,727,217NCBI
CeleraX13,926,415 - 14,088,764 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX7,649,792 - 7,749,592 (+)NCBIHuRef
CHM1_1X9,784,898 - 9,947,901 (+)NCBICHM1_1
T2T-CHM13v2.0X9,369,053 - 9,532,050 (+)NCBIT2T-CHM13v2.0
Shroom2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X151,392,505 - 151,553,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX151,392,505 - 151,552,461 (-)EnsemblGRCm39 Ensembl
GRCm38X152,609,509 - 152,770,788 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX152,609,509 - 152,769,465 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X149,044,052 - 149,204,004 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X147,950,225 - 148,110,177 (-)NCBIMGSCv36mm8
CeleraX136,481,951 - 136,643,123 (+)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
Shroom2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X25,308,163 - 25,480,194 (-)NCBIGRCr8
mRatBN7.2X21,812,469 - 21,983,724 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX21,812,469 - 21,984,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX22,717,791 - 22,888,882 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X26,138,766 - 26,309,855 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X22,394,408 - 22,565,439 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X23,478,869 - 23,649,424 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX23,478,871 - 23,649,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X23,895,809 - 24,066,198 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X42,290,709 - 42,462,067 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX22,219,215 - 22,383,703 (-)NCBICelera
Cytogenetic MapXq13NCBI
Shroom2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554998,031,615 - 8,100,952 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554998,031,961 - 8,103,307 (+)NCBIChiLan1.0ChiLan1.0
SHROOM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X11,589,946 - 11,751,915 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X11,593,613 - 11,755,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X2,418,883 - 2,580,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X9,673,879 - 9,832,733 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX9,755,524 - 9,832,733 (+)Ensemblpanpan1.1panPan2
SHROOM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X6,499,570 - 6,642,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX6,499,354 - 6,641,946 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX6,454,916 - 6,598,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X6,445,261 - 6,589,721 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X6,436,580 - 6,580,045 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X6,472,007 - 6,615,248 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X6,462,126 - 6,605,626 (+)NCBIUU_Cfam_GSD_1.0
Shroom2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049534,249,252 - 4,334,127 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493664442,581 - 127,531 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493664442,620 - 127,481 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHROOM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX6,296,219 - 6,448,992 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X6,296,212 - 6,450,401 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1Y4,753,733 - 4,785,766 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X6,699,136 - 6,801,756 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SHROOM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X8,242,714 - 8,405,051 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX8,345,056 - 8,405,552 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660569,916,285 - 10,080,497 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013066472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01085140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01085147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013066472   ⟹   XP_012921926
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246344   ⟹   XP_021102003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246345   ⟹   XP_021102004
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246346   ⟹   XP_021102005
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246347   ⟹   XP_021102006
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246348   ⟹   XP_021102007
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246349   ⟹   XP_021102008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
RefSeq Acc Id: XM_021246350   ⟹   XP_021102009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248347,329,651 - 7,504,960 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021102006   ⟸   XM_021246347
- Peptide Label: isoform X5
RefSeq Acc Id: XP_012921926   ⟸   XM_013066472
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021102003   ⟸   XM_021246344
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021102005   ⟸   XM_021246346
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021102007   ⟸   XM_021246348
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021102004   ⟸   XM_021246345
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021102009   ⟸   XM_021246350
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021102008   ⟸   XM_021246349
- Peptide Label: isoform X7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000734 ENTREZGENE
Ensembl Transcript ENSHGLT00000000931 ENTREZGENE
NCBI Gene Shroom2 ENTREZGENE