CUNH3orf80 (chromosome unknown C3orf80 homolog) - Rat Genome Database

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Gene: CUNH3orf80 (chromosome unknown C3orf80 homolog) Heterocephalus glaber
Analyze
Symbol: CUNH3orf80 (Ensembl: C3orf80)
Name: chromosome unknown C3orf80 homolog
RGD ID: 18910197
Description: FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized membrane protein C3orf80 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473037,980,908 - 37,981,630 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473037,980,820 - 37,983,370 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CUNH3orf80Naked Mole-Ratmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

PMID:21993625  



CUNH3orf80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473037,980,908 - 37,981,630 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473037,980,820 - 37,983,370 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C3orf80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383160,225,422 - 160,228,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3160,225,422 - 160,228,213 (+)EnsemblGRCh38hg38GRCh38
GRCh373159,943,209 - 159,946,000 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363161,425,777 - 161,428,694 (+)NCBINCBI36Build 36hg18NCBI36
Celera3158,364,792 - 158,367,369 (+)NCBICelera
Cytogenetic Map3q25.33NCBI
HuRef3157,342,144 - 157,344,648 (+)NCBIHuRef
CHM1_13159,906,643 - 159,909,220 (+)NCBICHM1_1
T2T-CHM13v2.03163,000,019 - 163,002,810 (+)NCBIT2T-CHM13v2.0
1110032F04Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,776,684 - 68,779,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl368,776,919 - 68,779,496 (+)EnsemblGRCm39 Ensembl
GRCm38368,869,586 - 68,872,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,869,586 - 68,872,163 (+)EnsemblGRCm38mm10GRCm38
MGSCv37368,673,508 - 68,676,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36368,956,550 - 68,960,092 (+)NCBIMGSCv36mm8
Celera368,982,228 - 68,984,806 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map332.06NCBI
C2h3orf80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82155,435,287 - 155,438,099 (+)NCBIGRCr8
mRatBN7.22153,125,312 - 153,128,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2153,125,676 - 153,126,419 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2160,254,955 - 160,257,770 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02158,305,482 - 158,308,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02152,938,248 - 152,941,063 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02165,486,809 - 165,489,356 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2165,486,910 - 165,487,653 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,847,604 - 184,850,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42158,872,555 - 158,873,421 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2147,476,281 - 147,478,828 (+)NCBICelera
Cytogenetic Map2q32NCBI
C2H3orf80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22158,158,011 - 158,169,366 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13158,162,732 - 158,174,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03157,247,154 - 157,250,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13165,295,538 - 165,296,975 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3165,296,161 - 165,296,902 (+)Ensemblpanpan1.1panPan2
C34H3orf80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3430,350,299 - 30,351,325 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03426,364,398 - 26,365,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3426,364,398 - 26,365,093 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13426,294,357 - 26,295,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03426,255,193 - 26,256,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03426,495,214 - 26,496,194 (+)NCBIUU_Cfam_GSD_1.0
CUNH3orf80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560292,173,596 - 92,176,652 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936708211,768 - 212,517 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936708211,593 - 213,700 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H3orf80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1399,925,375 - 99,928,684 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11399,924,886 - 99,928,687 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH3orf80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11530,606,300 - 30,609,710 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1530,608,491 - 30,609,234 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660413,134,107 - 3,137,115 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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RefSeq Transcripts XM_004834530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01001763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH172109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000029126   ⟹   ENSHGLP00000028600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473037,980,908 - 37,981,630 (+)Ensembl
RefSeq Acc Id: XM_004834530   ⟹   XP_004834587
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473037,980,820 - 37,983,370 (+)NCBI
Protein RefSeqs XP_004834587 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13438 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028600
RefSeq Acc Id: XP_004834587   ⟸   XM_004834530
- UniProtKB: G5BVX6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028600   ⟸   ENSHGLT00000029126



1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000020916 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029126 ENTREZGENE
InterPro DUF4719 UniProtKB/TrEMBL
KEGG Report hgl:101702095 UniProtKB/TrEMBL
NCBI Gene CUNH3orf80 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC100362176 UniProtKB/TrEMBL
  PTHR38505 UniProtKB/TrEMBL
Pfam DUF4719 UniProtKB/TrEMBL
UniProt G5BVX6 ENTREZGENE, UniProtKB/TrEMBL
1 to 9 of 9 rows