Gcnt4 (glucosaminyl (N-acetyl) transferase 4) - Rat Genome Database

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Gene: Gcnt4 (glucosaminyl (N-acetyl) transferase 4) Heterocephalus glaber
Analyze
Symbol: Gcnt4
Name: glucosaminyl (N-acetyl) transferase 4
RGD ID: 18910111
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN inter-male aggressive behavior (ortholog); kidney morphogenesis (ortholog); neutrophil homeostasis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Sandhoff disease (ortholog); FOUND IN Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4; glucosaminyl (N-acetyl) transferase 4, core 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462495115,367 - 38,669 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gcnt4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462495115,367 - 38,669 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GCNT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38575,016,969 - 75,054,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl575,025,346 - 75,052,558 (-)EnsemblGRCh38hg38GRCh38
GRCh37574,321,171 - 74,348,383 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36574,359,045 - 74,362,480 (-)NCBINCBI36Build 36hg18NCBI36
Celera570,217,451 - 70,220,886 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef569,528,134 - 69,531,569 (-)NCBIHuRef
CHM1_1573,756,061 - 73,759,496 (-)NCBICHM1_1
T2T-CHM13v2.0575,497,819 - 75,535,608 (-)NCBIT2T-CHM13v2.0
Gcnt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391397,060,852 - 97,087,422 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1397,061,197 - 97,087,414 (+)EnsemblGRCm39 Ensembl
GRCm381396,924,344 - 96,950,914 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,924,689 - 96,950,906 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,694,644 - 97,720,869 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera13100,561,219 - 100,587,502 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.66NCBI
Gcnt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8229,987,944 - 30,017,708 (+)NCBIGRCr8
mRatBN7.2228,253,325 - 28,283,082 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl228,252,860 - 28,283,082 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx235,300,997 - 35,331,013 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0233,401,074 - 33,431,089 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0228,215,443 - 28,246,105 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0 Ensembl227,713,880 - 27,780,119 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,825,580 - 46,828,021 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4227,439,605 - 27,441,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera224,297,063 - 24,327,571 (+)NCBICelera
Cytogenetic Map2q12NCBI
Gcnt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,662,036 - 25,681,948 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542525,661,648 - 25,681,948 (+)NCBIChiLan1.0ChiLan1.0
GCNT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2440,247,671 - 40,278,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1538,401,330 - 38,432,409 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0540,249,346 - 40,279,559 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1540,863,275 - 40,889,919 (+)NCBIpanpan1.1PanPan1.1panPan2
GCNT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1331,198,656 - 31,222,523 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl331,217,562 - 31,218,926 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha332,432,498 - 32,441,223 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0331,129,485 - 31,153,307 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl331,148,347 - 31,149,711 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1331,059,370 - 31,083,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0331,030,795 - 31,054,614 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,408,140 - 31,431,040 (+)NCBIUU_Cfam_GSD_1.0
Gcnt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213189,211,120 - 189,234,616 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365491,645,256 - 1,647,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCNT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl284,105,655 - 84,134,721 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1284,105,652 - 84,135,122 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2285,693,080 - 85,722,498 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCNT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,392,170 - 69,421,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,393,958 - 69,395,319 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604918,168,983 - 18,198,423 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004875060   ⟹   XP_004875117
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462495132,312 - 38,669 (+)NCBI
RefSeq Acc Id: XM_004875061   ⟹   XP_004875118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462495115,448 - 38,669 (+)NCBI
RefSeq Acc Id: XM_004875062   ⟹   XP_004875119
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462495115,367 - 38,669 (+)NCBI
RefSeq Acc Id: XM_021252378   ⟹   XP_021108037
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462495115,603 - 38,669 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004875117 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875118 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875119 (Get FASTA)   NCBI Sequence Viewer  
  XP_021108037 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000111
RefSeq Acc Id: XP_004875119   ⟸   XM_004875062
- UniProtKB: A0AAX6QK77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004875118   ⟸   XM_004875061
- UniProtKB: A0AAX6QK77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021108037   ⟸   XM_021252378
- UniProtKB: A0AAX6QK77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004875117   ⟸   XM_004875060
- UniProtKB: A0AAX6QK77 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000133 ENTREZGENE
Ensembl Transcript ENSHGLT00000000140 ENTREZGENE
InterPro Glyco_trans_14 UniProtKB/TrEMBL
NCBI Gene Gcnt4 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYL-O-GLYCOSYL-GLYCOPROTEIN BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE 4 UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE 14 FAMILY MEMBER UniProtKB/TrEMBL
Pfam Branch UniProtKB/TrEMBL
UniProt A0AAX6QK77 ENTREZGENE, UniProtKB/TrEMBL