Dgkd (diacylglycerol kinase delta) - Rat Genome Database

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Gene: Dgkd (diacylglycerol kinase delta) Heterocephalus glaber
Analyze
Symbol: Dgkd
Name: diacylglycerol kinase delta
RGD ID: 18909873
Description: ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN diacylglycerol catabolic process (ortholog); diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Joubert syndrome 22 (ortholog); Lennox-Gastaut syndrome (ortholog); FOUND IN clathrin-coated pit (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,899,538 - 5,957,422 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248435,879,335 - 5,959,525 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dgkd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,899,538 - 5,957,422 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248435,879,335 - 5,959,525 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DGKD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382233,354,494 - 233,472,098 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2233,354,494 - 233,472,104 (+)EnsemblGRCh38hg38GRCh38
GRCh372234,263,140 - 234,380,744 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,927,892 - 234,045,482 (+)NCBINCBI36Build 36hg18NCBI36
Build 342234,045,152 - 234,162,743NCBI
Celera2227,984,663 - 228,102,014 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2226,097,513 - 226,181,435 (+)NCBIHuRef
CHM1_12234,269,197 - 234,386,745 (+)NCBICHM1_1
T2T-CHM13v2.02233,842,577 - 233,960,616 (+)NCBIT2T-CHM13v2.0
Dgkd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,780,942 - 87,872,900 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,781,009 - 87,872,902 (+)EnsemblGRCm39 Ensembl
GRCm38187,853,264 - 87,945,177 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,853,287 - 87,945,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv37189,749,862 - 89,841,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera190,838,152 - 90,902,542 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.44NCBI
Dgkd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,964,507 - 96,055,160 (+)NCBIGRCr8
mRatBN7.2988,516,686 - 88,607,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,516,715 - 88,607,345 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0994,980,328 - 95,071,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,980,409 - 95,069,714 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0994,730,771 - 94,790,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,836,919 - 86,895,274 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera986,109,371 - 86,169,037 (+)NCBICelera
Cytogenetic Map9q35NCBI
Dgkd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554532,742,842 - 2,835,811 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554532,740,922 - 2,802,669 (-)NCBIChiLan1.0ChiLan1.0
DGKD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,956,130 - 136,075,046 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,971,100 - 136,090,010 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B120,582,278 - 120,701,165 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B239,496,098 - 239,611,873 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B239,525,401 - 239,611,873 (+)Ensemblpanpan1.1panPan2
DGKD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,851,827 - 44,961,352 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,851,493 - 44,961,364 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2545,346,277 - 45,456,570 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02545,111,139 - 45,221,033 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2545,111,114 - 45,221,493 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12545,035,406 - 45,145,670 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,881,415 - 44,991,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02545,036,791 - 45,147,308 (+)NCBIUU_Cfam_GSD_1.0
Dgkd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303187,042,192 - 187,112,792 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365253,828,939 - 3,897,529 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365253,826,929 - 3,897,618 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DGKD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,749,345 - 133,867,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115133,749,349 - 133,867,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,864,561 - 147,920,469 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DGKD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110119,390,217 - 119,509,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10119,390,330 - 119,511,134 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604079,989,364 - 80,113,656 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004868111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004868114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013066775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013066776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013066777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002390294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01088054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01088056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000010332   ⟹   ENSHGLP00000010218
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248435,899,538 - 5,957,378 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000010333   ⟹   ENSHGLP00000010219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248435,948,867 - 5,957,422 (+)Ensembl
RefSeq Acc Id: XM_004868111   ⟹   XP_004868168
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,339 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_004868114   ⟹   XP_004868171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,341 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_013066775   ⟹   XP_012922229
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,916,635 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_013066776   ⟹   XP_012922230
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,921,739 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_013066777   ⟹   XP_012922231
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,916,690 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246991   ⟹   XP_021102650
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,335 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246992   ⟹   XP_021102651
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,897,664 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246993   ⟹   XP_021102652
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,337 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246994   ⟹   XP_021102653
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,880,189 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246995   ⟹   XP_021102654
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,336 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246996   ⟹   XP_021102655
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,880,189 - 5,959,525 (+)NCBI
RefSeq Acc Id: XM_021246998   ⟹   XP_021102657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,335 - 5,955,578 (+)NCBI
RefSeq Acc Id: XM_021246999   ⟹   XP_021102658
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,901,008 - 5,959,525 (+)NCBI
RefSeq Acc Id: XR_002390294
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248435,879,335 - 5,956,558 (+)NCBI
RefSeq Acc Id: XP_021102650   ⟸   XM_021246991
- Peptide Label: isoform X1
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102657   ⟸   XM_021246998
- Peptide Label: isoform X9
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102654   ⟸   XM_021246995
- Peptide Label: isoform X5
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102652   ⟸   XM_021246993
- Peptide Label: isoform X3
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004868168   ⟸   XM_004868111
- Peptide Label: isoform X6
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004868171   ⟸   XM_004868114
- Peptide Label: isoform X7
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102653   ⟸   XM_021246994
- Peptide Label: isoform X4
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102655   ⟸   XM_021246996
- Peptide Label: isoform X8
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102651   ⟸   XM_021246992
- Peptide Label: isoform X2
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021102658   ⟸   XM_021246999
- Peptide Label: isoform X11
RefSeq Acc Id: XP_012922229   ⟸   XM_013066775
- Peptide Label: isoform X10
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922231   ⟸   XM_013066777
- Peptide Label: isoform X10
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922230   ⟸   XM_013066776
- Peptide Label: isoform X10
- UniProtKB: G5BXG2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010218   ⟸   ENSHGLT00000010332
Ensembl Acc Id: ENSHGLP00000010219   ⟸   ENSHGLT00000010333


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007333 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010332 ENTREZGENE
Gene3D-CATH 2.60.200.40 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
  Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
  Transcription Factor, Ets-1 UniProtKB/TrEMBL
InterPro ATP-NAD_kinase_N UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  C1_DGKdelta_rpt1 UniProtKB/TrEMBL
  C1_DGKdelta_rpt2 UniProtKB/TrEMBL
  DGK UniProtKB/TrEMBL
  DGK-delta_SAM UniProtKB/TrEMBL
  DGKD_4H UniProtKB/TrEMBL
  Diacylglycerol_kin_accessory UniProtKB/TrEMBL
  Diacylglycerol_kinase_cat_dom UniProtKB/TrEMBL
  NAD/diacylglycerol_kinase_sf UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene Dgkd ENTREZGENE
PANTHER DIACYLGLYCEROL KINASE UniProtKB/TrEMBL
  DIACYLGLYCEROL KINASE DELTA UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  DAGK_acc UniProtKB/TrEMBL
  DAGK_cat UniProtKB/TrEMBL
  DGKD_4H UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PROSITE DAGK UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART DAGKa UniProtKB/TrEMBL
  DAGKc UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SM00109 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP Cysteine-rich domain UniProtKB/TrEMBL
  NAD kinase/diacylglycerol kinase-like UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SAM/Pointed domain UniProtKB/TrEMBL
UniProt A0AAX6Q5F4_HETGA UniProtKB/TrEMBL
  A0AAX6Q9C9_HETGA UniProtKB/TrEMBL
  A0AAX6QJQ3_HETGA UniProtKB/TrEMBL
  A0AAX6RY02_HETGA UniProtKB/TrEMBL
  A0AAX6S1P6_HETGA UniProtKB/TrEMBL
  A0AAX6S1V1_HETGA UniProtKB/TrEMBL
  A0AAX6S2B1_HETGA UniProtKB/TrEMBL
  A0AAX6S2U1_HETGA UniProtKB/TrEMBL
  A0AAX6S3I0_HETGA UniProtKB/TrEMBL
  A0AAX6S3S5_HETGA UniProtKB/TrEMBL
  A0AAX6S4W7_HETGA UniProtKB/TrEMBL
  G5BXG2 ENTREZGENE, UniProtKB/TrEMBL