CUNH19orf47 (chromosome unknown C19orf47 homolog) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CUNH19orf47 (chromosome unknown C19orf47 homolog) Heterocephalus glaber
Analyze
Symbol: CUNH19orf47 (Ensembl: C19orf47)
Name: chromosome unknown C19orf47 homolog
RGD ID: 18909200
Description: ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C19orf47 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925344,820 - 358,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925344,058 - 361,283 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CUNH19orf47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925344,820 - 358,184 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925344,058 - 361,283 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C19orf47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,292,954 - 40,348,527 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,319,536 - 40,348,527 (-)EnsemblGRCh38hg38GRCh38
GRCh371940,825,443 - 40,854,434 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,518,810 - 45,546,133 (-)NCBINCBI36Build 36hg18NCBI36
Celera1937,626,510 - 37,653,832 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,262,248 - 37,289,644 (-)NCBIHuRef
CHM1_11940,826,647 - 40,854,116 (-)NCBICHM1_1
T2T-CHM13v2.01943,113,226 - 43,169,048 (-)NCBIT2T-CHM13v2.0
2310022A10Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,252,482 - 27,281,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,252,658 - 27,281,524 (+)EnsemblGRCm39 Ensembl
GRCm38727,553,243 - 27,582,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,553,233 - 27,582,099 (+)EnsemblGRCm38mm10GRCm38
MGSCv37728,338,314 - 28,367,118 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,262,071 - 27,290,855 (+)NCBIMGSCv36mm8
Celera722,135,661 - 22,164,045 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.93NCBI
C1h19orf47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,971,879 - 92,010,938 (+)NCBIGRCr8
mRatBN7.2182,844,309 - 82,871,187 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,844,286 - 82,868,320 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,246,919 - 88,270,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,734,243 - 96,758,296 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,002,782 - 90,026,779 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,361,715 - 84,388,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,361,736 - 84,386,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,578,655 - 85,605,519 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,635,298 - 82,660,248 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,718,629 - 82,737,874 (+)NCBI
Celera177,257,162 - 77,281,153 (+)NCBICelera
Cytogenetic Map1q21NCBI
CUNH19orf47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578905,661 - 925,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955578905,540 - 925,570 (+)NCBIChiLan1.0ChiLan1.0
C20H19orf47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,553,599 - 46,611,140 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,421,769 - 48,481,801 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,369,187 - 37,396,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,883,009 - 45,909,918 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,883,009 - 45,910,012 (-)Ensemblpanpan1.1panPan2
C1H19orf47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,325,289 - 113,353,039 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,322,757 - 113,343,736 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,727,217 - 112,754,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,923,661 - 113,951,448 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,921,117 - 113,947,123 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,482,913 - 113,510,417 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,115,411 - 113,142,958 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,109,416 - 114,136,760 (+)NCBIUU_Cfam_GSD_1.0
CUNH19orf47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,292,728 - 14,313,313 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,719,387 - 2,741,373 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,719,382 - 2,741,373 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H19orf47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,616,681 - 48,645,305 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,622,830 - 48,645,362 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,396,797 - 44,408,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH19orf47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,720,781 - 34,804,515 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl634,774,174 - 34,803,219 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607312,852,657 - 12,898,312 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004082   ⟹   ENSHGLP00000004024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624925344,820 - 358,184 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000004083   ⟹   ENSHGLP00000004025
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624925344,820 - 358,184 (-)Ensembl
RefSeq Acc Id: XM_004874190   ⟹   XP_004874247
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 357,294 (-)NCBI
RefSeq Acc Id: XM_013069061   ⟹   XP_012924515
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 361,283 (-)NCBI
RefSeq Acc Id: XM_021251683   ⟹   XP_021107342
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 355,905 (-)NCBI
RefSeq Acc Id: XM_021251684   ⟹   XP_021107343
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 355,905 (-)NCBI
RefSeq Acc Id: XM_021251685   ⟹   XP_021107344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 355,905 (-)NCBI
RefSeq Acc Id: XM_021251687   ⟹   XP_021107346
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 358,184 (-)NCBI
RefSeq Acc Id: XM_021251688   ⟹   XP_021107347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 357,059 (-)NCBI
RefSeq Acc Id: XM_021251689   ⟹   XP_021107348
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624925344,058 - 358,171 (-)NCBI
RefSeq Acc Id: XP_012924515   ⟸   XM_013069061
- Peptide Label: isoform X2
- UniProtKB: A0AAX6QS04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107346   ⟸   XM_021251687
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SH44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107348   ⟸   XM_021251689
- Peptide Label: isoform X6
- UniProtKB: A0AAX6SFQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004874247   ⟸   XM_004874190
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SH44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107347   ⟸   XM_021251688
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SH44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107344   ⟸   XM_021251685
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SEV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107342   ⟸   XM_021251683
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SEL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107343   ⟸   XM_021251684
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SEP5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004025   ⟸   ENSHGLT00000004083
Ensembl Acc Id: ENSHGLP00000004024   ⟸   ENSHGLT00000004082


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002964 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004082 ENTREZGENE
NCBI Gene CUNH19orf47 ENTREZGENE
UniProt A0AAX6QS04 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SEL2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SEP5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SEV2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SFQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SH44 ENTREZGENE, UniProtKB/TrEMBL